Agrobacterium vitis VAR03-1: RvVAR031_14940
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Entry
RvVAR031_14940 CDS
T08810
Symbol
ndk
Name
(GenBank) nucleoside diphosphate kinase
KO
K00940
nucleoside-diphosphate kinase [EC:
2.7.4.6
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00230
Purine metabolism
avf00240
Pyrimidine metabolism
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01232
Nucleotide metabolism
avf01240
Biosynthesis of cofactors
Module
avf_M00049
Adenine ribonucleotide biosynthesis, IMP => ADP,ATP
avf_M00050
Guanine ribonucleotide biosynthesis, IMP => GDP,GTP
avf_M00052
Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP
avf_M00053
Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
avf_M00938
Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
RvVAR031_14940 (ndk)
00240 Pyrimidine metabolism
RvVAR031_14940 (ndk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
avf04131
]
RvVAR031_14940 (ndk)
Enzymes [BR:
avf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.4 Phosphotransferases with a phosphate group as acceptor
2.7.4.6 nucleoside-diphosphate kinase
RvVAR031_14940 (ndk)
Membrane trafficking [BR:
avf04131
]
Exocytosis
Calcium ion-dependent exocytosis
Kinases and associated proteins
RvVAR031_14940 (ndk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NDK
Motif
Other DBs
NCBI-ProteinID:
BCH53884
LinkDB
All DBs
Position
1:1643980..1644402
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AA seq
140 aa
AA seq
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MAIERTFSMIKPDATKRNLTGAITKVFEDNGLRVVASKRVWMSTREAEGFYAVHKERPFF
GELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPAQAAEGTIRKQFALSIGENSVHGSD
APETAAEEIAYWFAATEIVG
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgaacgcaccttttcgatgatcaagccggatgcaaccaagcgtaacctgacg
ggcgcgatcaccaaggtttttgaagacaacggcctgcgcgtcgttgcttcgaagcgcgtc
tggatgagcacgcgcgaagctgaaggcttctacgccgttcacaaggaacgccctttcttc
ggcgaactggttgaaggcatgacgtccggcccaaccgtggttcaggttctggaaggcgaa
ggcgccatcctcaagaaccgcgaaatcatgggcgcgaccaaccctgcccaggctgccgaa
ggcacgatccgcaagcagttcgccctctccatcggcgaaaattccgttcacggctccgac
gccccggaaaccgctgctgaagaaatcgcttactggttcgcagcgaccgaaatcgtcggc
tga
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