Agrobacterium vitis VAR03-1: RvVAR031_15210
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Entry
RvVAR031_15210 CDS
T08810
Symbol
rnd_2
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avf03016
]
RvVAR031_15210 (rnd_2)
Enzymes [BR:
avf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RvVAR031_15210 (rnd_2)
Transfer RNA biogenesis [BR:
avf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RvVAR031_15210 (rnd_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
wHTH-Calcineurin_assc
Motif
Other DBs
NCBI-ProteinID:
BCH53911
LinkDB
All DBs
Position
1:complement(1670242..1671396)
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AA seq
384 aa
AA seq
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MISTTQDLEAACEKLAGSEFITIDTEFLRETTFWPELCLIQMASPDLEVIVDPLADGLDL
APFFKLMANGDVIKVFHAARQDIEIIFHLGNLIPHPIFDTQVAAMVCGFGDSVSYDQLVQ
KIKNIHIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLTLKAELEREGRASWLSEEM
AILESRDTYDLHPDDAWQRLKMRLRKPQELMVMKAVTAWREREARARNVPRSRVIKDDAI
FEIAQQQPRDVEALGRLRTIPKGWERSTPGGAIIEAVNAALAIPKAEWPQVQRQNHVPEG
TAPAVELLKVLLRLTCEQHGVAAKMIANTDDLEKIAVEGEQADVQAMRGWRRDLFGESAL
KLINGGVALRFVGKKIEAVEFIEP
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgatttccacaactcaagatttagaagccgcttgcgaaaaactggccggatctgaattt
atcaccatcgacaccgagttcctgcgcgaaaccaccttctggccggaactgtgcctgatc
cagatggccagtcccgatctggaagtcatcgtcgatccgctggctgatgggctcgatctt
gccccatttttcaagctgatggccaatggcgacgtgatcaaggtgtttcacgccgcgcgc
caggacatcgaaatcatttttcacctcggcaatctcattccccatccgatcttcgacacc
caggtcgcggccatggtctgcggctttggcgacagcgtgtcctatgatcagctggtccag
aagatcaagaatatccatatcgacaaaagctcacgctttaccgactggagccgccgtccg
ctctcggaaaagcagctggattatgcgctggccgatgtcacccatctgcgcgatgtctac
ctgacgctgaaggcggagctggagcgggaaggccgcgccagctggctaagcgaggaaatg
gccattctcgaatcccgcgacacctatgacctgcatccagacgatgcctggcagcgcctg
aagatgcggctgagaaaacctcaggagctgatggtgatgaaggccgtgaccgcctggcgc
gagcgtgaagcccgcgcccgcaacgtcccccgctcacgggtgatcaaggacgacgctatt
ttcgaaatcgcccaacagcagccaagggatgtcgaggcgctggggcggctccggaccatt
ccgaagggttgggagcgctcaacgccgggtggcgcgatcatcgaggcggtcaatgccgcc
ctggcaattcccaaggccgaatggccgcaggtccagcgccagaaccacgtgccggaaggc
acggcaccggcggtggaactgctcaaggtgctgctgcgcctgacctgcgaacagcatggc
gtcgccgcaaagatgattgccaataccgacgacctggaaaagattgccgttgagggcgaa
caggccgatgtgcaggctatgcgcggctggcggcgtgatctgttcggcgaatcggctctg
aagctgatcaatggcggtgtagcccttcgcttcgtcggcaagaagatcgaagccgtcgaa
tttatcgaaccctga
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