Agrobacterium vitis VAR03-1: RvVAR031_15370
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Entry
RvVAR031_15370 CDS
T08810
Symbol
glyA1
Name
(GenBank) serine hydroxymethyltransferase 1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00260
Glycine, serine and threonine metabolism
avf00460
Cyanoamino acid metabolism
avf00630
Glyoxylate and dicarboxylate metabolism
avf00670
One carbon pool by folate
avf00680
Methane metabolism
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01120
Microbial metabolism in diverse environments
avf01200
Carbon metabolism
avf01230
Biosynthesis of amino acids
avf01240
Biosynthesis of cofactors
avf04981
Folate transport and metabolism
Module
avf_M00140
C1-unit interconversion, prokaryotes
avf_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RvVAR031_15370 (glyA1)
09102 Energy metabolism
00680 Methane metabolism
RvVAR031_15370 (glyA1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RvVAR031_15370 (glyA1)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
RvVAR031_15370 (glyA1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
RvVAR031_15370 (glyA1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
RvVAR031_15370 (glyA1)
Enzymes [BR:
avf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
RvVAR031_15370 (glyA1)
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GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
DegT_DnrJ_EryC1
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
BCH53927
LinkDB
All DBs
Position
1:1692434..1693723
Genome browser
AA seq
429 aa
AA seq
DB search
MANTDAFFSRPLAETDPDIFGAIEKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYA
EGYPGKRYYGGCQFVDIAEELAIERAKKLFGVNFANVQPNSGSQMNQAVFLALLQPGDTF
MGLDLNSGGHLTHGSPVNMSGKWFNVVSYGVRQDDNLLDMDAVAESARKHKPKLIIAGGT
AYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGNQHPSPFPHCHVATTTTHKSLRGPR
GGMILTNDEDLAKKFNSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFQDYAAQVVKNAKA
LSETLVKGGLDIVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYVTCNKNGIPFDPEKPF
VTSGVRLGTPAGTTRGFKEAEFIEIGNLIVEVLDGLKVANSDEGNSAVEASVRDKVVGLT
GRFPMYPYL
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggccaataccgatgctttcttttcccgtccgcttgccgaaaccgatccggatattttt
ggtgcgattgaaaaggagctcggtcgtcaacgccatgaaatcgagctgattgcttctgaa
aacatcgtctcgcgcgccgtgctggaagcgcagggctcgatcatgaccaacaaatatgcc
gagggctatccgggcaagcgctattacggtggctgtcagttcgtggatattgccgaggaa
ttggcgatcgaacgcgccaagaagctgtttggcgtcaattttgccaatgttcagcccaat
tccggttcgcagatgaaccaggccgtattcctggcgctgttgcagccgggcgataccttc
atgggtctcgacctgaattccgggggccatctcacccacggttcgccggtcaacatgtca
ggcaagtggttcaacgtcgtctcctatggcgtgcgtcaggacgataatcttctggacatg
gatgcggtggctgaatcggcccgcaaacacaagcccaagctgatcattgccggtggcaca
gcctattcgcggatctgggactggaagcgcttccgtgagatcgcagacgaagtcggcgcc
tatctgatggtcgatatggcccatatcgctggtctggtcgctggcaatcagcatccgtcg
ccgttcccgcattgccacgtcgccaccacaacgacacacaagtcgttgcgtggcccgcgt
ggcggcatgatccttaccaatgatgaggatctggccaagaagttcaattcggctgtcttc
cccggtctccagggcggcccgctgatgcatgtgattgccgctaaggcggttgcctttggc
gaggccttgcagccggaattccaggattatgccgctcaggtggtcaagaacgccaaggct
ctgtccgaaaccctggtcaagggtggcctcgatatcgtctccggcggtaccgacaaccat
ttgatgctggtcgacctgcgcaagaagaacgccaccggcaagcgcgccgaggcagccctt
ggccgcgcctatgtcacctgcaacaagaacggcattccgttcgatcctgaaaagcccttc
gtcacctcgggtgttcgcctcggcacgccagctggcacgacccgtggcttcaaggaggct
gaatttatcgaaatcggtaatctgattgttgaggttctcgacggtctgaaagttgccaat
tccgacgagggcaatagtgccgtcgaggcaagcgttcgcgataaggtcgttggcctgacg
ggccgtttcccgatgtatccttacctgtaa
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