Agrobacterium vitis VAR03-1: RvVAR031_16410
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Entry
RvVAR031_16410 CDS
T08810
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03030
DNA replication
avf03430
Mismatch repair
avf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAR031_16410 (dnaE)
03430 Mismatch repair
RvVAR031_16410 (dnaE)
03440 Homologous recombination
RvVAR031_16410 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avf03032
]
RvVAR031_16410 (dnaE)
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_16410 (dnaE)
Enzymes [BR:
avf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RvVAR031_16410 (dnaE)
DNA replication proteins [BR:
avf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RvVAR031_16410 (dnaE)
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RvVAR031_16410 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
nlz1
HROB
Motif
Other DBs
NCBI-ProteinID:
BCH54031
LinkDB
All DBs
Position
1:1800649..1804137
Genome browser
AA seq
1162 aa
AA seq
DB search
MSDMGASGQAVVKAGPGFVHLRVHSAYSLLEGALPLKKILSKVASDQQPAIAITDTNNLF
IALEFSQKALGDGLQPIIGCQLSIDMEDANEEKRGNSSLAKYPAIVLLAADPAGYERLVD
LVSRAYLQGDNTQSVHITASWLEEIGTDGLIALTGASGGPVDLPVKDGHQAQALSRLQTL
KSLFGDRLYIELQRHQGYDRVHESRMIALAYDHDIPLVATNEAFFPSRDDYDAHDALMAV
AHNAIVSDDRRFRLTPDHYLKSRKEMQALFKDLPEALENTVEIASRCSFVLDTRNPILPR
FTGGSDDPEEAERAEAGELRRQAIEGLDDRLAKLGMAPGYEEKEYRDRLDFELGVIERMK
FPGYFLIVADFIKWAKSQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPER
VSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQV
DRICKLVPNNPANPTPLSKAIEEEPKFQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAG
IVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFCRL
RDIEIDLATIPLDDEKTYQMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYR
PGPMENIPVYNARKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEAD
LLRRAMGKKIKEEMDKQRARFVDGAVKNGVSKPQADNIFDLLAKFANYGFNKSHAAAYAI
VSYQTAYMKAHYPVEFLAASMTLDMANTEKLVDFRQDAGRLGIEVVPPSVQTSFRHFQTG
PNRIYYSLAALKGVGDAAVEHIVTVRADTPFADLEDFCLRIDPKQINRRVFESLIFAGAF
DCFGRDRPELLAGMDRIIGYAQRAQENAVSGQSDMFGSGGVTGPERISFPTYTPWLPSEK
LMREFQVLGFYLSAHPLDTYKPLLEKMRVQNFADFSGAVRQGATAGRLAGTVISKQERKT
RTGNKMGIVTFSDATGQFEAVLFSEGLNQYRDLLESGKSLVITVAAEERPEGIGLRIQTA
QSLEEKSLQMQKTLRVYLRDSSPLRALAAHLNTKGDGLVSFVVIKEDGRREIEVELNQRF
RITPEIAAAMRSAPGVVDVELV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatgggcgcaagcggacaggctgtagtaaaggcgggtccaggtttcgtccat
ttgagagtgcattcggcctattcgctgctggaaggtgcgctgccgctgaagaaaattctg
agcaaggttgcatccgaccagcaaccggccatcgctatcacagataccaataacctgttc
attgcgctcgagttttcccagaaggcgcttggcgatggcttgcagccgatcattggctgt
caattgtccatcgatatggaagacgccaatgaggaaaagcggggcaatagctctcttgcc
aaatatcccgccattgtgcttctcgccgccgatccggcaggttatgagcggctggtagac
ttggtcagccgtgcctatctacagggcgataatactcagtctgtgcatatcaccgcctcc
tggctggaagagatcggcacagatggcctgatcgccctgacgggtgcatcaggcggtccg
gtcgatctgccggtgaaggacggccaccaagcccaggcgctgtcgcggcttcagacactc
aaatcgctgttcggggatcggctttatatcgaattgcagcgccaccaagggtatgaccgt
gtgcatgaaagccggatgattgcgctggcttatgatcatgatattccattggttgccacc
aatgaggccttttttccgagccgtgacgattatgatgcccatgacgcgctgatggcggtt
gcccataacgccatcgtctccgatgaccggcggtttcgcctgacaccggatcattatctg
aaaagccgcaaggaaatgcaggccttgtttaaggatctgccggaagcgcttgaaaatacg
gtggagattgccagccgctgttctttcgttctcgacacccgcaatcctatactgccgcgc
tttaccggtggtagcgacgatccggaagaggctgagcgcgccgaggccggggagttgcgt
cgtcaggccatcgagggattggatgaccggctggcgaagctcggcatggcgccaggttat
gaggagaaggaatatcgtgaccggctcgattttgagcttggcgttattgagcgaatgaaa
tttcccggctacttcctgatcgttgccgacttcatcaaatgggccaagagccaggatatt
ccggtcggccccggccgtggttccggtgcgggttcgctggtcgcctatgccttgaccatt
accgatgttgatccgctgcggttctccttgctgttcgaacgcttcctcaatcctgagcgc
gtctcgatgcccgacttcgacatcgacttctgccaagatcgccgtgaagaggtgatccgt
tatgtgcagcgcaaatatgggcgcgagcaggtggcgcagatcatcactttcgggtcgctc
caggcccgtgcagccttgcgcgacgttggccgcgtgctggaaatgccctatgggcaggtc
gacaggatctgtaagctggtgccgaacaatccggccaatcctacccccttgtccaaggcc
attgaagaagagccaaagtttcaggaggaggcggagaaggagcctgtcgtcgcccgtctt
ctggatatcgcccagaagatagagggactttatcgccacgcctcaacccatgccgccggt
atcgttatcggtgaccgcccgctgtccaagctggtgccgatgtatcgcgatccgcgctcg
gatatgccggttacccagttcaacatgaagtgggtggagcaggccgggctggtcaagttc
gactttctcggattgaagacgctgacggtgctgaaaaccgctgtggatttctgccggctg
cgcgatatcgagatcgatctggccaccattccgctggacgatgaaaaaacctatcaaatg
ctgtcacgcggtgagaccgtcggtgtgttccaggtggaaagtgccggtatgcgcaaggcg
ctgatcggtatgcgccccgactgtatcgaggatattatcgcgctggtggcgctctatcgt
ccggggccgatggagaatattccggtctacaatgcccgtaagcatggcgaggaggagatc
gaatcgatccatccgaccatcgattacctgctgaaggaaacccagggggttatcgtttat
caggagcaggtcatgcaggtggcccaggttctgtcgggttattcgctcggtgaagcggat
cttctgcgccgtgctatgggtaagaagatcaaggaggaaatggacaagcagcgcgcccgt
ttcgtcgatggcgcagtgaagaatggcgtctcaaagccccaggccgacaatattttcgac
ctgttggcgaagtttgccaattacggcttcaacaaatcccacgccgccgcctatgccatt
gtctcctaccagaccgcctatatgaaggcgcattatccggtggagtttctggctgcgtcg
atgacgctcgatatggccaataccgaaaaactggtggatttccgccaggacgccgggcgt
ctcggcatcgaggtcgtaccaccctcggtgcagacctctttccggcacttccagacgggg
ccgaacaggatttactattcgctcgccgccttgaagggcgtcggcgatgcagccgtcgag
catatcgtgacggtccgcgccgatacgccctttgccgatctcgaggatttttgtctgcgg
atcgacccgaagcagatcaatcgccgggtgtttgaaagcctgatttttgccggcgccttc
gattgttttggccgcgaccgtcccgaactattggctggcatggaccggattatcggctat
gcgcaacgcgcccaggaaaatgccgtcagcggccagtcggacatgtttggctctggtggt
gtcacagggccggagcggatttcctttccgacctatacgccctggctgccatctgaaaag
ctgatgcgggagtttcaggttctgggcttctatctctcggcccatccgctcgacacctat
aaaccgctgctggaaaagatgcgcgtgcagaatttcgcagacttttccggcgctgtgcgc
caaggcgcgacggcgggtcggctggccgggacggtgatttcaaagcaggagcgcaagaca
cgaaccggaaacaaaatgggcattgtgaccttctcggatgccactggccagttcgaggcg
gtgttgttttcggaaggcttgaaccagtatcgcgacctgctcgaatcgggcaagtcactg
gtgatcacggttgccgcagaagaacggcccgaaggtattggtcttcgtatccagacggcg
caatctctggaagaaaaatccttgcagatgcaaaagacgctgcgcgtctacctgcgcgat
tccagccccttgcgggcgctggccgcccatctcaataccaagggcgatggattggtttcc
ttcgtggtgatcaaggaagatggccgccgcgaaatcgaggtcgaactcaatcaacgtttc
cgtatcactccggaaattgccgccgccatgcggtccgcgccgggcgtggtggatgttgaa
ttggtatag
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