Agrobacterium vitis VAR03-1: RvVAR031_18550
Help
Entry
RvVAR031_18550 CDS
T08810
Name
(GenBank) peptidoglycan-binding protein
KO
K21470
L,D-transpeptidase YcbB
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
avf01002
]
RvVAR031_18550
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
avf01011
]
RvVAR031_18550
Peptidases and inhibitors [BR:
avf01002
]
Cysteine peptidases
Family C82
RvVAR031_18550
Peptidoglycan biosynthesis and degradation proteins [BR:
avf01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
RvVAR031_18550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
BCH54245
LinkDB
All DBs
Position
1:2018710..2020554
Genome browser
AA seq
614 aa
AA seq
DB search
MQKPSLNRALIAVLLTTSTVVAALPQTASATTLMDLLRGRSEERRQPAPAEIIPQAQLRD
PEPIQKVAAPRYYAYKAENKRAISIKAPDMPIPVFGEDHALAVAHLAMSQVKVEATPDVA
QAVENYYNNKGALIWASDTAITDKAKSAIAALATADTAGLEPADYAVKVPDGLDTMPEDA
RRQALMAFELNLSAKILTYVQDTVRGRLDPNRISGYHDFKRKTVNLDPVLDLVRSSPDIA
AYLHGRDPASPQFQALKAELAKLVAEANQQQSKPVKIDLKGVLKPGGSNPELANIVEGIK
TYGSDALKTEHALTLTDYTGTPDYTPELVALVESYQKERGLKPDGVIGQATVRTMVGHSN
AEKIEKLVVAMEQLRWLPADLGPRYVFINQPAFEAYYFNDRQQQIAMKVVVGAPQHQTFF
FQNMIQTVEFNPYWGVPRSIIVNEMLPKLRQDPSYLDRLGYEVSYKGRKVASSQVDWYTT
SDVDVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFKRDMRALSHGCVRLAEPRVMA
AAVMGTTVEDIDAQIASGQNRAVQVPQKFPVYVAYFTAWPDKDGVVRYYDDVYGRDEATR
KAFDVTSTSRGVQS
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaaaccttcactgaaccgggcgctgattgcagtcctcctgaccacgtccacggtt
gtggccgccctgccgcagacggcgagcgccacgaccctgatggatctgctgcgcggcagg
tcggaggagcgtcgccaaccagcgccggcggaaatcattccccaggcccaattgcgcgat
ccagagccgatccagaaggtcgccgcacctcgctactatgcctataaggccgagaacaag
cgtgcgatctccatcaaggcaccggacatgccgattccggtttttggtgaagaccatgcc
ctggccgtcgcccatctcgccatgtcgcaggttaaggtcgaagccacgcccgacgtggcg
caggctgtggaaaactattataacaacaagggcgcgctgatctgggccagtgataccgcc
atcaccgacaaggcgaaatcggcgattgctgcgctggcaacggcggatacggccgggctt
gagccagccgattatgcggtgaaagtgcctgatggtctcgataccatgcccgaagacgct
cgccgccaagcgttgatggccttcgaactcaatctgtcggccaaaatcctgacctatgtt
caggacacagtgcgcggcaggctcgatccgaaccgcatttcgggctatcacgatttcaag
cgcaagaccgtcaatctcgatccggtgctggatctggtgcgctccagcccggatatcgcc
gcctatctgcatggccgcgatccggccagcccgcagttccaggcgctgaaggctgagctt
gccaagttggtggcagaggccaatcagcagcagagcaagcccgtcaagatcgatctgaag
ggcgtattgaagcccggcggcagcaatcccgagcttgccaatatcgtcgaaggcatcaag
acctatggcagcgacgcgctgaagaccgagcatgcgctgacgctgaccgactacaccggc
acgccggactacacaccggaactggtggcgctggtcgagagctaccagaaggaacgcgga
ctgaagccggatggcgtcattggccaggcaacggtccgcaccatggttggtcattccaat
gccgagaagatcgaaaagcttgtggttgccatggagcaattgcgctggttgcctgccgat
ctggggccgcgctatgtgttcatcaaccaaccggctttcgaggcctattatttcaacgac
cgccagcagcagattgccatgaaggtcgtggtcggtgcgccccagcaccagaccttcttc
ttccagaacatgattcagacggtggaattcaacccttactggggcgttccacggtcgatc
atcgtcaatgaaatgctgcccaagctgcgccaggacccgagctatctcgaccgtctcggc
tatgaagtcagctataagggccgcaaggtggcctcctcgcaggttgattggtacaccacc
agcgatgtcgatgttcgccagccgccaagcagcgacaatgcgctgggcgacctgaagatc
ctgttcccgaatgcccatgccatctacatgcatgacacaccggcgaaaagcttcttcaag
cgcgatatgcgcgcgctcagccacggctgtgtgcgtctggccgagccgcgtgtcatggcc
gcagccgtgatgggcacgacggttgaagacattgatgcgcagattgcctccggccagaac
cgcgccgtgcaagtgccgcagaagttcccggtttatgtcgcctatttcaccgcctggccg
gataaggatggggtcgttcgttattacgacgacgtctatggccgtgatgaagcgacccgc
aaggccttcgacgtgacatcgacctcgcgcggcgtgcagagttga
DBGET
integrated database retrieval system
