Agrobacterium vitis VAR03-1: RvVAR031_19100
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Entry
RvVAR031_19100 CDS
T08810
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03030
DNA replication
avf03430
Mismatch repair
avf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAR031_19100 (holB)
03430 Mismatch repair
RvVAR031_19100 (holB)
03440 Homologous recombination
RvVAR031_19100 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avf03032
]
RvVAR031_19100 (holB)
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_19100 (holB)
Enzymes [BR:
avf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RvVAR031_19100 (holB)
DNA replication proteins [BR:
avf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RvVAR031_19100 (holB)
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RvVAR031_19100 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
nSTAND3
Pox_E10
RuvB_N
AAA_16
AAA_5
NACHT
Phage_tail_C
Motif
Other DBs
NCBI-ProteinID:
BCH54300
LinkDB
All DBs
Position
1:2081432..2082454
Genome browser
AA seq
340 aa
AA seq
DB search
MEKPGLLDGAIAPFANDRLFGHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFA
HHVLSHPDPASAPFVIADPDPNSLVGRQIASGASHNLLHIARPVDEKTGRVKASITVEEI
RKAGHFFSQTSGGGNWRIVILDPADDMNRNAANAILKVLEEPPKRSLFLVLSHAPGKLLP
TIRSRCMPLKLQTLGADDLASALAHLGVSPLVEQMAALSDLSKGSVSQALKLINYGGMEI
IAAFNAILASEGPAARKQMHKLADALSAKDSDVIYHFFIEHLSEFLMDNARQVAMAGDLA
RAERLSRLSSAIVEKLGVAGAYNLDRKQTLLEILGEVAAV
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcccggtcttcttgatggtgccattgcgccttttgccaatgacaggttgttt
ggccatggcgcggcggaacagtttctggccagctcctaccaatccggcaagctgcatcat
gcaatcctgatcgaagggccggaagggatcggcaaggcaacgctggcctttcgctttgcc
catcatgtcctgtcgcatccagaccccgccagtgcgccctttgtcatcgctgacccggac
cccaactcgctggtcggacggcagattgcctctggtgcctcgcataatctcctgcatatc
gcccgaccggtggatgaaaagaccggaagggtgaaagcctcgattaccgtggaggaaatc
cgcaaggccggacatttcttttcccagacttcaggcggcggcaattggcggatcgtcatt
ctcgatcccgccgacgacatgaaccgcaatgcggccaatgccattttgaaagtgctggaa
gagccgccgaaacggtcgctgtttctggttctgtcccatgcgccgggcaagcttttgccc
accatccgctcgcgctgcatgccgttgaaactgcaaacgcttggcgctgatgatcttgcc
agcgcactggcgcatctgggggtctcaccacttgttgagcagatggcggcgctttccgat
ctgtcgaagggcagcgtgtcgcaggcgttgaaactgatcaattatggcggcatggaaatc
atcgctgccttcaatgcgatcctggcgagtgaaggtccggcggcgagaaaacagatgcat
aagctggccgatgcgctttcagccaaggacagtgacgtgatctaccatttcttcatcgag
catctgtctgaattcctgatggacaatgcgcgtcaggtggcgatggcgggcgatcttgcc
cgggcagagcggctgtcgcggctttccagcgccatcgtcgaaaagcttggcgtggccggg
gcctataacctcgaccgtaagcagacgctgctggaaattcttggcgaggtcgcggctgtg
taa
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