Agrobacterium vitis VAR03-1: RvVAR031_21220
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Entry
RvVAR031_21220 CDS
T08810
Symbol
cpdB
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K01119
2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:
3.1.4.16
3.1.3.6
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00230
Purine metabolism
avf00240
Pyrimidine metabolism
avf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
RvVAR031_21220 (cpdB)
00240 Pyrimidine metabolism
RvVAR031_21220 (cpdB)
Enzymes [BR:
avf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.6 3'-nucleotidase
RvVAR031_21220 (cpdB)
3.1.4 Phosphoric-diester hydrolases
3.1.4.16 2',3'-cyclic-nucleotide 2'-phosphodiesterase
RvVAR031_21220 (cpdB)
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Gene cluster
GFIT
Motif
Pfam:
5_nucleotid_C
Metallophos
PGA_cap
TAT_signal
Motif
Other DBs
NCBI-ProteinID:
BCH54512
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All DBs
Position
1:2313773..2315776
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AA seq
667 aa
AA seq
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MSPLAHLRPSDLHPITRRSLLGGFAAASALVVLHPFAARAAANQAHLRLMETTDIHVNLM
PYDYYADKPNDTMGLTRTATLIDEIRAEAGNSMLIDNGDLLQGSPMGDYMAYKKGIKAGD
QHPVMKAMNTLGYDCGTLGNHEFNYGLDFMFNTLAAAKYPIVCANLTKGQLASDPKNDAL
FFKPFTIIEKTIKDGAGAESVIKVGFIGFVPPQIMLWDAKNLEGKAQTRDIVEAARAWVP
VMKEQGADIVIALSHSGIDGSGQTERMENASLYLATVDGIDAIFTGHQHLVFPGPKTWDG
VQGADPLKGTLMGKPAVMAGFWGSHMGLIDFMLEKDGNRWKIVDFTAEARPIYHRDDAKK
IIADVRDNQNVVAAIKDEHEATLAYVRTPVGKTSAPLYSYFALVADDPSVQIVSNAQTWY
IKDMLKETKYKDYPVLSAAAPFKAGGRGGADYYTDVPAGDIAIKNVSDLYLYPNTVQAVL
ITGAQVKNWLEMSAGMFNQIKPGSKDAALLNLDFPSYNYDVIDGVTYEIDLSQPAKYDKD
GKPVNPDANRIKNLSFNGKPIDPAQQFVVVTNNYRAGGGGKFPEIASDKVIFVGPDTNRD
VIVRYIVAQGTINPAADGNWRFAAIPDTTASFQTGPKGRAFAAEVKGAKIEDAGDGADGF
ANYRLIL
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccactcgcacacttgcgcccctccgacctgcaccctattacgcgccgctcgctg
ttgggaggttttgccgctgccagcgctcttgtcgtgctgcatccgtttgccgcccgggcg
gcagccaatcaggcgcatttgcggttgatggaaaccaccgacatccatgtcaacctgatg
ccctatgactattatgccgacaagcccaatgacacgatgggcctgacgcgcacggcgacg
ctgatcgacgagatccgggccgaagctggcaactccatgttgatcgacaatggcgatttg
ctgcaaggcagcccgatgggcgactacatggcctataagaaaggcatcaaggccggtgat
cagcacccggtcatgaaggccatgaacacgctgggttacgattgcggcacgcttggcaat
catgaattcaattacggcctcgacttcatgttcaacacgctggcggcggcgaaatatcct
attgtctgcgccaacctgaccaagggccagctggcgtccgatccgaaaaatgacgcgctg
ttcttcaagccctttacgatcattgaaaagacgatcaaggacggtgcgggtgccgagagc
gtcatcaaggtcggctttatcggcttcgttccgccgcagattatgctctgggatgccaag
aaccttgaaggcaaggcccagacccgtgacatcgtcgaggcggcgcgcgcctgggtacct
gtgatgaaagagcaaggtgccgatatcgtcatcgcgctatcgcattccggtatcgatggc
agcggccagacggagagaatggaaaatgcctcgctttacctggcgaccgttgacggcatc
gatgcgattttcaccggccatcaacatctggtctttcccggccctaagacctgggatggc
gtccagggcgctgatccgctgaagggaacattgatgggcaagcccgccgtcatggctggt
ttctggggctcacatatgggcctgatcgacttcatgctggaaaaagacggcaatcgctgg
aaaatcgtcgatttcaccgccgaggcgcgaccgatctatcaccgcgatgacgccaagaaa
atcattgccgatgtcagggacaaccaaaacgtcgtggcggccataaaggacgagcatgag
gcgactttggcctatgtgcgcaccccggtcggcaagacctctgcaccgctttactcctat
tttgcgctagtggccgacgacccgtcggtgcagatcgtgtccaatgcccagacctggtat
atcaaggacatgctgaaggagacgaagtacaaggattacccggtactgtcagccgcagcc
cccttcaaggctggcggccgcggtggcgccgattattataccgatgttcccgcaggcgat
attgccatcaagaatgtctccgacctttacctctatccgaataccgtgcaggcggtgctg
ataacaggcgcgcaagtcaagaactggctggaaatgtcggctggcatgttcaaccagatc
aagcccggctcaaaagacgcagccctgctcaatctcgacttcccatcctacaattacgac
gtgatcgatggcgtcacctacgagatcgacctgtcgcagcccgcgaaatatgacaaggat
ggcaagccggtcaatccggatgcaaaccggatcaagaacttgagctttaacggcaagccg
atcgatcccgcccagcaatttgtggtcgtcaccaacaattaccgcgccggtggtggtgga
aaattccctgagatcgcctccgacaaggtgattttcgtcggcccggataccaatcgcgat
gtcatcgttcgctatatcgtcgcgcagggcaccataaaccctgctgccgacggcaattgg
cgctttgccgcaatccccgacacgaccgccagcttccagacaggccccaagggccgggcg
tttgcagccgaggtcaagggcgcaaagatcgaggatgccggtgacggcgcggacggtttt
gccaattaccggctcattctgtga
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