Agrobacterium vitis VAR03-1: RvVAR031_22500
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Entry
RvVAR031_22500 CDS
T08810
Symbol
secD
Name
(GenBank) protein translocase subunit SecDF
KO
K12257
SecD/SecF fusion protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02024
Quorum sensing
avf03060
Protein export
avf03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
RvVAR031_22500 (secD)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RvVAR031_22500 (secD)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_22500 (secD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
avf02044
]
RvVAR031_22500 (secD)
Secretion system [BR:
avf02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
RvVAR031_22500 (secD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SecD_SecF_C
SecDF_P1_head
SecD_1st
Sec_GG
SecD-TM1
MMPL
Sterol-sensing
Motif
Other DBs
NCBI-ProteinID:
BCH54640
LinkDB
All DBs
Position
1:complement(2455625..2458195)
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AA seq
856 aa
AA seq
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MLHFSRWKTILLWLAVVASVLIALPDLFSKDQLARLPSWFPSKQMTLGLDLQGGSHIMLK
IERNDIVKERLEAVVGDIRSSLRDAGVRYTGLNGVGQAVQVRITDPAQLDAARKALQTLT
APVSTGGFGSSSIQEATLDDSGDGLLKFNLTDAGIDYRMSSALTQSIEVVRRRVDELGNT
EPLIQRQGSDRIIVQVPGLDDPQRLKNLLNQTAKLSFRMVDTSMSATEAISGRPPATSEV
LYSQDEAAVPYLVEKRVLVSGEDLVDAQASFNQQNNEPVVSFRFDSRGAQRFAQATQQNV
GRPFAIVLDNQVISAPVIREPIVGGSGQISGNFTVQGANDLAVLLRAGALPATLTVVEER
TVGPSLGADSIRAGVSAGFIGAGLVVVLMIGLYGFFGVLAVLALFANIVMIIAILTLLGS
TLTLPGIAGIVLTIGMAVDSNVLIYERIREEYKSGRSLIQSIDIGFNKALATIVDANVTT
LIAAGVLFFLGSGPVRGFSVTLAIGIITTVFTAFGLTRWMFTVWVNTRRPKAMPKGVRTG
IFDGTNIPFMGVRRYTFLLSAALSIAALVGFGTVGMKLGIDFTGGSIIELKARQGNADPA
AIREQLSSLNLGDVQVQGFGDPSSVLVRLQAQDEGENGEQSAVAKVRGALEQGYEFRRTE
VVGPSVSGELTKSATIGVLISLMAILVYIWIRFEWQFAAGAIIATLHDVILTLGLYVITG
VEFDLSSIAAILTIVGYSLNDTVVVYDRMRENLRRYKKMPLDVLIDTSINQTLSRTILTS
VTTLLALLALFLFGGEVIRSFTFAMLFGVLVGTFSSIYMAAPVLIAFRLRPEGQGEPDKA
EKAKPEKNGAAGKAGA
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgctgcatttctcccgctggaaaaccattcttctctggcttgccgtcgtggcgagcgtc
ctgatcgcgctgcccgacctgttcagcaaggatcaactggcccgtcttccgtcctggttc
ccgagcaagcagatgacgctcggcctcgatttgcagggcggctcgcatatcatgctgaag
atcgagcgcaacgatatcgtcaaggagcggctcgaagccgtggttggcgatatccgcagc
agtcttcgcgatgcgggcgttcgctataccgggctgaatggcgttggccaggccgtacaa
gtgcgcattaccgatcccgcccagctcgatgcggcgcggaaagccttgcagacactgacc
gcgccggtcagcactggcggtttcgggtcgagcagcatccaggaagcgacgctggacgat
agcggcgacgggttgttgaaattcaatctcaccgatgccggtattgattaccgcatgtcc
tcggcactgacccagtccatcgaagtcgtgcgtcgccgcgtcgatgagcttggcaatacc
gagccgttgatccagcgtcagggctccgaccggatcatcgttcaggtgccgggtcttgat
gatccgcagcgtttgaagaatcttctgaaccagactgcgaagctgagcttccgcatggtc
gataccagcatgtcggccaccgaagcgatcagcggccgcccacctgcgacatccgaagtg
ctctacagccaggatgaggcggctgtgccttatctggtcgaaaagcgggttctggtttcc
ggcgaggatctcgtcgatgcgcaggcaagcttcaatcagcagaataacgaaccggtcgtc
agcttccgctttgatagccgtggtgcgcagcgctttgcccaggcaacccagcagaatgtc
gggcggccctttgccatcgtactcgacaatcaggtgatttccgcgcctgtgatccgtgaa
ccgattgtcggtggctctggccagatttccggcaatttcacggtgcagggcgccaatgac
ctagccgttctgctgcgcgctggcgcactgccggcaaccttgaccgtagtcgaagagcgc
accgttggcccaagccttggcgccgattcgatccgggccggtgtttctgccggctttatc
ggcgcggggctggtcgtggtgctgatgatcgggctttacggcttcttcggcgtgcttgct
gttctggcgctgtttgccaatatcgttatgattattgcgatcctgacgctgcttgggtcg
acgctgacgttgccgggtatcgccggtatcgtgctgaccatcggtatggcggttgattcc
aacgtgctgatctacgagcgtatccgcgaggaatataagagcggtcgttccctgatccag
tcgatcgatatcggctttaacaaggccttggcgaccattgtcgatgccaatgtcacgacg
ctgattgccgctggtgtgttgttctttcttggctccggtccggtgcgtggcttctcggta
acgctggccattggtatcatcaccacggtgtttaccgcctttggtttgacccgctggatg
tttaccgtctgggtcaacacgcgccgtcccaaggcgatgcccaagggggtgcggaccgga
attttcgatggcaccaatattccgttcatgggtgtccgccgttacacgttcctgctgtcg
gctgccttgtcgattgccgccctcgtcggtttcggcacagtcggcatgaagctcggcatt
gattttaccggcggttcgatcatcgagttgaaggcccgtcagggcaatgccgatcctgct
gcgatccgtgaacagttgagcagtctcaaccttggggatgttcaggtccaaggctttggc
gatccaagcagtgttctggtccgtttgcaggcccaggatgagggtgaaaacggcgagcag
tcggcggtggccaaggtgcgtggcgcgttggaacagggttacgagttccgccgtaccgaa
gtcgttggcccgtccgtatcgggtgagttgacgaaatcggcgaccattggcgtgctgatt
tcgctgatggcgatcctggtctatatctggatccggtttgaatggcagtttgcggcaggc
gcgatcatcgcaaccctgcacgacgtcatcctgacgcttggcctctatgtgatcaccggg
gtggaattcgacctcagcagtatcgcggcgatcctgacgattgtcggctattcgctgaac
gataccgtggtggtttatgaccgtatgcgcgagaacctgcgtcgttacaagaaaatgccg
ctggatgtgctgatcgacacgtcgatcaaccagaccctgtcgcggaccatattgacatcg
gtcaccacgcttctggctcttctggccctgttcctgtttggtggcgaggttatccgctcc
ttcacctttgccatgctgttcggggttctcgtcggcacattctcctctatctatatggcg
gcgccggtgctgatcgccttccgtctgcgccccgagggccagggcgagccggataaggct
gaaaaagcaaagcctgaaaagaacggcgcagcgggcaaggcgggagcatag
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