Agrobacterium vitis VAR03-1: RvVAR031_23400
Help
Entry
RvVAR031_23400 CDS
T08810
Name
(GenBank) transcriptional regulator
KO
K05800
Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
avf03000
]
RvVAR031_23400
Transcription factors [BR:
avf03000
]
Prokaryotic type
Helix-turn-helix
Lrp/AsnC family
RvVAR031_23400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_24
AsnC_trans_reg
HTH_AsnC-type
MarR
HTH_20
HTH_34
MarR_2
HTH_IclR
HTH_5
HTH_Crp_2
HTH_11
WHD_DprA
HVO_A0114
HVO_A0261_N
Fe_dep_repress
CcdA
TFA2_Winged_2
Motif
Other DBs
NCBI-ProteinID:
BCH54730
LinkDB
All DBs
Position
1:complement(2546929..2547393)
Genome browser
AA seq
154 aa
AA seq
DB search
MIDERDRKILDLLQRDAAIAVSDLADKVALSVSACSRRILKLEEGGYIERRIAVLNRDKV
GVPTTVYALVKTAHHTDEWTEEFRRAITDIAEIVEAHRLTGHHDYILKIVLPRVEHYDVV
YRRLVRRIELFDVSASISMETMKSGSAVPVDYAV
NT seq
465 nt
NT seq
+upstream
nt +downstream
nt
gtgattgacgagagagacaggaagattctggacctgctgcaacgagatgcggctattgcg
gtgagcgatctggccgataaggttgccctatcggtttcggcctgttcgcgccgtatcctg
aagctggaagaggggggctatatcgagcgacggatcgccgtgctcaatcgcgataaggtg
ggcgtaccgaccactgtctacgcgctggtcaaaaccgcgcatcataccgatgaatggact
gaggaatttcgccgggcgattaccgatatcgccgaaattgtcgaggcgcatcgcctgacc
ggacaccatgattatatcttgaagattgtcctgccgcgggtcgagcattacgacgtggtc
tatcgtcggctggtgcggcgtatcgagcttttcgatgtgtccgcctctatttcgatggag
acgatgaaaagcggttctgcggtgccggtggattatgctgtgtga
DBGET
integrated database retrieval system
