Agrobacterium vitis VAR03-1: RvVAR031_23750
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Entry
RvVAR031_23750 CDS
T08810
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03420
Nucleotide excision repair
avf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RvVAR031_23750
03430 Mismatch repair
RvVAR031_23750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_23750
Enzymes [BR:
avf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RvVAR031_23750
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RvVAR031_23750
MMR (mismatch excision repair)
Other MMR factors
RvVAR031_23750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF4420
Motif
Other DBs
NCBI-ProteinID:
BCH54765
LinkDB
All DBs
Position
1:2585079..2587601
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AA seq
840 aa
AA seq
DB search
MSNGFDDIPFFDEEPAPRTSAKGAKGTATPEKETTTPAGGGLGIAARAMAARDQNRNPDY
LSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATNRAFPSQILAVTFTNKA
AREMKERVGVLVGGAVEGMPWLGTFHSIGVKLLRRHAELVGLTSDFTILDTDDVVRLIKQ
IIQAEGLDDKRWPAKMFAGMIDGWKNKGLDPAQIPEGDARAFGNGKGRELYAAYQARLKS
LNACDFGDLLLHPIRMFRANPDVLKDYHQRFRYILVDEYQDTNTAQYMWLRLLAQRPSSR
TADGKVINGTVNICCVGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHIL
GAAGFLIAHNEGRLGKTLFTDRVDPNDEKVVVHAAWDSEEEARAVGEEIEQLQRNQHKLN
DMAILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRMVCQPADDLAFE
RIVNTPKRGLGDTTVRTLHDYARTRDIPMLAAASDIIETDELKPKARKALFDVVTDFRRW
QDLLENTPHTELAEQILDESGYTAMWQNDKSAEAPGRLENLKELIRSMEAFESMRSFMEH
VSLVMDAETNENLDAVSIMTLHSAKGLEFETVFLPGWEEGLFPHQRALDEGGRAALEEER
RLAYVGLTRAKRRCHLWFVSNRRIHGLWQSTMPSRFLDELPPAHVEVAEVETSYGGYGRG
GYGQSRFDKQEPFTNSYSTPGWKRAQANKTDATRENWGSRSGHAVERIGYGESGPRGQTI
DGQLVAKSTSNEPSKFTVGDRVFHIKFGNGNVSMVEGNKLTIDFDRAGQKRVLDGFVERA
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacggttttgacgatattcccttcttcgacgaagagcctgcaccccgcacctcc
gcaaaaggagcgaaaggcacggctacgccggaaaaggaaaccacgacgcctgcgggcggc
ggattgggcatcgctgcgcgtgccatggcggcgcgcgaccagaaccgcaacccggattat
ctctccggtctcaacccggaacagcgcgaagcggtggaaaccctggatggtccggttctt
gttctggcgggtgccggcaccggcaagacacgggtattgaccacccgcatcgcccatatt
ctcgccaccaaccgcgcctttcccagccaaatcctggcggtgaccttcaccaacaaggca
gcccgcgagatgaaggagcgtgttggcgttctggtcggcggcgctgtcgaaggtatgccc
tggcttggcacattccactccatcggcgtcaagctcttgcgccgccatgccgagctcgtc
ggcctgacctcggatttcaccattctcgataccgatgacgtggtgcggctgatcaagcag
atcatccaggccgaagggttagacgacaagcgctggcccgccaagatgtttgccggaatg
atcgatggctggaaaaacaagggcctcgacccggcgcagattcccgaaggcgacgcccgc
gcctttggcaatggcaagggccgcgagctttacgccgcctaccaggcccggctgaaaagc
ctgaatgcctgtgatttcggtgatcttctgctgcatccaatccgcatgttccgcgccaat
ccagatgtgctgaaggattaccaccagcgctttcgctatatccttgtcgatgagtatcaa
gacaccaacacggcgcaatatatgtggttgcggctgttggcacagcggccaagcagcaga
accgctgacggcaaggtgataaacggcacagtcaacatctgctgcgttggcgatgacgat
cagtcgatctatggctggcgtggggccgaagtggataacatcctgcgcttcgagaaggat
tttccgggcgcaaaagtcatcaagctggagcgcaattaccgctcgacggagcatattctc
ggcgctgccgggttcctgattgcccataacgaggggcgcctgggtaagacgctgtttacc
gaccgggtcgatccaaacgacgaaaaagtcgtggtgcatgccgcctgggattcggaagaa
gaagcccgcgcggttggcgaggaaatcgaacagctgcaacgcaaccagcataagctcaac
gacatggccatcctggtgcgcgcctccttccagatgcgcgagtttgaagaccggttcgta
acgcttggcctgaactaccgggtcattggcggtccgcgcttttacgagcggttggaaatc
cgcgatgccatggcctatttccgcatggtctgccagccagccgacgacctggccttcgag
cggatcgtcaacacgccgaagcgtgggttaggcgacaccacggtgcgcaccctgcatgac
tatgcccgtacacgagatattccgatgctggctgcggcctccgacatcatcgagaccgac
gaactaaagccgaaggcgcgcaaggcactgtttgacgtggtgacggatttccgccgctgg
caggatctgctggaaaacacgccgcatacagaactcgccgaacagatcctcgacgagagc
ggctatacggccatgtggcagaacgacaaatcggcggaagcgccggggcggctggaaaac
ctgaaggaactgatccgctcgatggaagccttcgagagcatgcgcagcttcatggagcat
gtctcgctggtgatggatgccgagaccaacgaaaatctcgacgccgtatcgatcatgacg
ctgcattccgccaaggggctggaattcgaaacggtgttcctgcccggctgggaagaaggc
ctgtttccgcatcagcgcgcccttgatgaaggcggacgcgccgcgctggaggaagaacgg
cggctggcctatgtcggcctgacgcgggccaagcgccgctgtcacctgtggttcgtctcc
aaccggcgcatccatggcctgtggcaatcgaccatgccgtcgcgcttcctggatgaacta
ccgcccgcccatgtggaagtggcagaagtggaaaccagctatggcggctatggacgcggc
ggctacggccagtcccgcttcgacaagcaggagcctttcaccaattcctactccaccccc
ggctggaaacgcgcccaggccaacaagaccgacgccacccgcgaaaactggggcagccgc
tccggccacgcggtcgaacgcatcggctacggcgaaagcggcccccgcggccaaaccatc
gacggccagttggtcgccaaatccaccagcaatgaaccatcaaagttcacagtcggcgac
cgggtttttcatatcaaattcggcaatggcaatgtgtcgatggttgagggcaacaagctg
acgatcgattttgaccgggcggggcaaaagcgggtgctggacgggtttgtggagcgggcg
tag
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