Agrobacterium vitis VAR03-1: RvVAR031_23970
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Entry
RvVAR031_23970 CDS
T08810
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03030
DNA replication
avf03430
Mismatch repair
avf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAR031_23970
03430 Mismatch repair
RvVAR031_23970
03440 Homologous recombination
RvVAR031_23970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avf03032
]
RvVAR031_23970
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_23970
Enzymes [BR:
avf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RvVAR031_23970
DNA replication proteins [BR:
avf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RvVAR031_23970
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RvVAR031_23970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
BCH54787
LinkDB
All DBs
Position
1:complement(2607118..2607729)
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AA seq
203 aa
AA seq
DB search
MQPKIIAIDFETANEERGSACSVGLAFVENGEVVRVEERLIRPKTMRFSSFNIAIHGIRP
DHVEDAGEFPEVMDEFADDFAGAMVVAHNAAFDLSVWRASCDLYRQPYPSLSYVCSVKLA
QKVWPQLPSHRLNVLAAHLQLSFRHHNAAEDASVCAQAVIAMMERRGTQDLGELAGMMGL
SIGRLFPGGYQSCSVRKPARVPA
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
ttgcagcccaaaatcatcgcaatcgatttcgagaccgccaatgaagagcggggcagtgcc
tgttcggtcgggctggcctttgtcgaaaacggagaggtcgtgcgggtagaagagcgcctg
atccgcccgaagaccatgcggttttcctccttcaacatcgccatccacgggatcaggcct
gatcacgtcgaggatgcgggcgaatttcccgaagtgatggatgaatttgccgatgatttc
gctggcgcgatggtggtggcgcataatgccgccttcgatctgtcggtgtggcgggcaagt
tgcgatctctatcgccagccctacccaagcctgtcttacgtatgcagcgtcaagctggcg
cagaaggtctggccgcaattgccctcccatcggctgaatgtgttggcggcgcatctgcaa
ttgtccttccggcatcacaatgccgccgaagatgcgtccgtttgcgcgcaagcggtcatt
gcgatgatggagcgccggggtacgcaggatctgggcgagcttgctggcatgatggggctt
tccattgggcgactgtttccgggcggctatcaatcctgctcggttcgcaagccggcgcgg
gtgcctgcttga
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