Agrobacterium vitis VAR03-1: RvVAR031_24220
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Entry
RvVAR031_24220 CDS
T08810
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00470
D-Amino acid metabolism
avf00550
Peptidoglycan biosynthesis
avf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RvVAR031_24220 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RvVAR031_24220 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
avf01011
]
RvVAR031_24220 (murD)
Enzymes [BR:
avf01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
RvVAR031_24220 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
avf01011
]
Precursor biosynthesis
Amino acid ligase
RvVAR031_24220 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
TrkA_N
FAD_binding_3
NAD_binding_2
2-Hacid_dh_C
ApbA
KARI_N
NAD_Gly3P_dh_N
CbiA
YjeF_N
Motif
Other DBs
NCBI-ProteinID:
BCH54812
LinkDB
All DBs
Position
1:complement(2637766..2639181)
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AA seq
471 aa
AA seq
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MIPVSSFSDRSVALFGLGGSGLATARALVAGGAAVTVWDDNPDSVEKARAEGLEARDLRQ
IDWSGLSAFVLSPGVPLTHPKPHWTVDLAKAAGVEIIGDIELFVRERRAKAPDCPFIAIT
GTNGKSTTTALIGHILRHNGYDVQMGGNIGTAVLTLEPPAPDRYYVVECSSYQIDLAPGI
DPTAGILLNLTPDHLDRHGSMENYAAVKERLVSGSGVAIIGVDDDYCLEIATRLEEAGKE
VVRISKGQPLTDGLYNDGQRIVRGDGGAAEVIADLNGIATLRGSHNAQNAAAAIAACLTV
GLSKEQIQAGLSSFAGLKHRMQPVGRRGHVVFVNDSKATNAEASAPALSSYERIYWIAGG
LPKQGGIASLSPLFPRIAKAYLIGEAASGFAATLGNAVPYEISGTLDRALAHASADAQGD
MNGGEVAVMLSPACASFDQYKNFEVRGEAFVSLVAGLDDVTMLIQQASGET
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgatcccggtttccagcttttccgatcgcagtgttgccctattcggccttggcggctcc
ggccttgccacggcgcgcgccctggtggccggtggtgcggcggtgacggtctgggatgac
aatcccgacagcgtcgagaaggcgcgggcagaagggctggaggcacgagacctgcgccag
atcgactggagcgggctttccgcctttgttttgtcgccgggcgtaccgctgacccatccc
aagccgcattggacggtggatctggcaaaggcagcgggcgtcgagatcattggcgatatc
gagcttttcgtgcgcgagcgtcgggcgaaagccccggattgcccgttcatcgccattacc
ggcaccaatggcaaatcgaccaccacggcgctgattggccatattcttcgccacaacggc
tatgacgtgcagatgggcggcaatatcggcacggcggtgctgacactggagccacccgca
cctgatcgttattatgtggtggaatgctcatcctatcagattgatcttgcccccggcatc
gacccgacggcaggcattctcttgaacctcacccccgaccatctcgaccgccacggcagc
atggagaattatgcggcggtgaaagagcggctggtgtctggcagtggtgtggcaatcatc
ggcgtcgatgacgactattgccttgagatcgccacgcggctcgaagaggcgggtaaagag
gtcgtgcggatttccaagggccagcctttgaccgacggcctttacaatgacggccagcgg
attgtgcgtggcgatggtggcgctgccgaggtgatcgccgacctaaacggtatcgccacg
ctgcgtggcagccacaatgctcagaacgcggcagcggccattgctgcttgcctgacggtc
ggcttgtcgaaagagcagatccaggctggcttgtcctcctttgcagggttgaagcaccgg
atgcagccggttgggcggcggggacatgtggtgttcgtcaatgacagcaaggcgaccaat
gccgaggcgtctgcaccggccttgtccagttacgagcggatctactggatcgctggcggc
ttgcccaagcagggtgggattgccagcctttcaccgctgtttccgcgcattgccaaggcc
tatctgatcggcgaggcggcgtccggctttgccgccacgctcggcaatgccgttccttac
gaaatttccggtacgctggaccgggcgcttgcccatgctagcgccgatgcgcaaggcgat
atgaatggcggcgaggttgccgtgatgctctccccggcttgcgcaagcttcgaccagtac
aagaattttgaagtcaggggcgaagctttcgtttcgctggtagccgggcttgacgatgtg
acgatgctgatccaacaggcttcaggagagacatga
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