Agrobacterium vitis VAR03-1: RvVAR031_24260
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Entry
RvVAR031_24260 CDS
T08810
Symbol
pbpB1
Name
(GenBank) cell division protein
KO
K03587
cell division protein FtsI (penicillin-binding protein 3) [EC:
3.4.16.4
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00550
Peptidoglycan biosynthesis
avf01100
Metabolic pathways
avf01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RvVAR031_24260 (pbpB1)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RvVAR031_24260 (pbpB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
avf01011
]
RvVAR031_24260 (pbpB1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
avf03036
]
RvVAR031_24260 (pbpB1)
Enzymes [BR:
avf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RvVAR031_24260 (pbpB1)
Peptidoglycan biosynthesis and degradation proteins [BR:
avf01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
RvVAR031_24260 (pbpB1)
Chromosome and associated proteins [BR:
avf03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
RvVAR031_24260 (pbpB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Beta-lactamase
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
BCH54816
LinkDB
All DBs
Position
1:complement(2643296..2645044)
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AA seq
582 aa
AA seq
DB search
MTFLSRMMLLKSRAHFSTDVRRGAVRGKGRAFEGAGKRKADMAKRRVGLLILGFTLVYGV
IGGRLVQYGYAHPESTSSIMPPDRLMAARPDILDRNGQVLATDIRTVSLFAEPHKIVDVD
EAVEKLQTVLADLDSRDTYKKLSSKSHFQWLRRQLTPKQQSQILALGIPGIGFRPEIRRF
YPGGSTAAHIVGFVNIDNRGMAGMEKYIDNQGLADLADLGMTSNAPLEPVKLSIDLRVQN
IVHDVVAAAQVNFKAKSAGAVVLDVETGEVLGMASYPDFDPNKPEEGAKEGWLNRMSNGT
FEMGSTFKSFTMAMGLDTGRVKLTDVFDARYPLKIGGFTIHDFHGQSKFLSVPDIFKYSS
NIGTAKIIDVVGIPEQKEYLNRLGLLTKMKTELPEVKMPSQPRGEWKKISSVTISFGHGV
ATTPLQTAVAGAALINGGKLIQPTFLPRTADQANEVAEAVLKPSTSADMRYLFEYNGING
SGRGARVPGLDVGGKTGTADKVVNGRYDSKLNFNAFLGAFPMSKPRYVVLSFIDEPLSGE
GGGTISAFTALPIVRDVIRRTAPILGVEPNYGQVGNDMLVSY
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacttttctttcccgcatgatgctcctgaaaagccgggcccatttttccaccgatgtg
cgccgtggcgccgtgcgcggcaagggccgcgcgttcgaaggcgctggcaagcgcaaggcg
gatatggccaagcgccgagtcggcctgctgatcctgggtttcacgcttgtctatggcgtg
attggcggacggctggtgcaatacggctatgcccatcccgaaagcacctcgagcatcatg
ccgccggaccggctgatggcggcgcgtcccgatattctcgatcgaaatgggcaggttctg
gccaccgatattaggacggtgtcgctgtttgcagagccgcacaagattgtcgatgtggat
gaagccgtcgaaaagctgcaaacggtgctggccgacctagacagccgcgacacctacaag
aaactctcgtcgaaatcgcatttccagtggcttcgccgtcagttgacgcccaagcagcag
agccagatccttgcgctgggtattcccggcatcggctttcggccggaaattcgccgtttc
tatcccggtggctccacggcggcccatatcgtcggcttcgtcaatatcgacaatcgcggc
atggccgggatggagaaatatatcgacaaccagggcttggcggatctggccgatctcggc
atgaccagcaatgcgccgctggagccggtcaagctctccatcgacctgcgcgtccagaat
atcgttcatgacgtggtggccgctgcccaggtgaatttcaaggccaagtcggcgggtgcc
gtggtgctggatgtcgaaaccggcgaagtgctgggcatggcgtcctatcccgatttcgac
cccaacaagcccgaggaaggcgccaaggaaggctggttgaaccggatgtcgaacggcacg
ttcgaaatgggctcgaccttcaaatccttcacgatggcgatggggcttgataccggtcga
gtgaagctgaccgacgtgttcgatgcacgctatccgctgaaaatcggtggtttcactatt
cacgatttccacggtcagagcaaattcctgagcgttcccgatattttcaaatattcctcc
aatatcggcacggcaaagatcatcgatgtggtcggtattcccgagcagaaggaatacctg
aaccgcctgggtcttctgaccaagatgaagacggaactgccggaagtgaaaatgccatcc
cagcctcgcggcgagtggaagaagatcagttcggtcaccatttccttcggccatggggtt
gcgacgacaccgttgcagacggcggtcgccggtgcggcgctgatcaatggcggcaagttg
atccagccgacattcctgccgcgcacggcagatcaggctaatgaagtggcagaggcggtg
ctgaagccatccaccagtgccgatatgcgttatctctttgaatataatggcattaacggc
tccggtcgtggcgcgcgtgtccccggtctcgatgtcggcggcaagacaggcacagccgat
aaggtcgtcaatggccgttatgacagcaagctgaatttcaacgcctttctgggtgcattc
ccgatgagcaagccacgctatgtggttctgagctttatcgacgagcccttgagcggcgag
ggcggtgggacgatttcggcctttaccgctttgccgatcgtgcgcgacgttattcgcaga
acggccccaattctcggtgtagaacccaattatggtcaggtgggcaatgatatgctcgtc
tcatattga
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