Agrobacterium vitis VAR03-1: RvVAR031_29280
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Entry
RvVAR031_29280 CDS
T08810
Symbol
serA
Name
(GenBank) D-3-phosphoglycerate dehydrogenase
KO
K00058
D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:
1.1.1.95
1.1.1.399
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00260
Glycine, serine and threonine metabolism
avf00270
Cysteine and methionine metabolism
avf00680
Methane metabolism
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01120
Microbial metabolism in diverse environments
avf01200
Carbon metabolism
avf01230
Biosynthesis of amino acids
Module
avf_M00020
Serine biosynthesis, glycerate-3P => serine
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09102 Energy metabolism
00680 Methane metabolism
RvVAR031_29280 (serA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RvVAR031_29280 (serA)
00270 Cysteine and methionine metabolism
RvVAR031_29280 (serA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
avf04147
]
RvVAR031_29280 (serA)
Enzymes [BR:
avf01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.95 phosphoglycerate dehydrogenase
RvVAR031_29280 (serA)
1.1.1.399 2-oxoglutarate reductase
RvVAR031_29280 (serA)
Exosome [BR:
avf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
RvVAR031_29280 (serA)
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GFIT
Motif
Pfam:
2-Hacid_dh_C
PGDH_inter
2-Hacid_dh
F420_oxidored
ACT
NAD_binding_2
RS_preATP-grasp-like
KARI_N
UPF0020
Motif
Other DBs
NCBI-ProteinID:
BCH55318
LinkDB
All DBs
Position
1:complement(3187914..3189509)
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AA seq
531 aa
AA seq
DB search
MAPRVLVSDELSETAVQIFRDRGVEVDFQPQLGKDKDKLAEIIGNYDGLAIRSATKATEK
LIAAATNLKVIGRAGIGVDNVDIPAASRRGIIVMNTPFGNSITTAEHAIALMFAVARQLP
AADASTQAGKWEKSKFMGVEITGKVLGVIGAGNIGGIVCKKAIGLGMHVIAYDPFLSAER
AQEMGVKKVELDELLAQADFITLHVPMTDKTRGILGKENLAKTKPGVRIINCARGGLVDE
AALAEAIKSGHVAGAGFDVFEVEPAKESPLFGLPNVVCTPHLGASTTEAQENVALQVAEQ
MSDYLVNGAVSNAINMPSITAEEAPLLKPFIRLADVLGAFVGQVTDGAIKEIEILYDGQT
ATMNTKALTSALLAGLIRAQVSDVNMVSAPIMIKEKGIVLSEVKRDKTGVYDGYIKLTVT
TEKQTRSIAGTVFSDGKPRFIQIKGINLDADVGPHMIYISNTDVPGMIGFMGTTLGNAGV
NIANFQLGREKESGDAIALLYVDGPVEQAVLDQLTANAAIKQARLLTFAVE
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggcacctcgcgttctcgtctctgatgaattgtcagaaaccgccgtccagattttccgc
gatcgcggcgttgaagtggatttccagccgcagctcggcaaggataaagacaaattggcc
gaaatcatcggcaattacgatggtctggccatccgttcggccaccaaagccacggaaaag
ctgattgctgccgccaccaacctcaaggtgattggccgcgctggtatcggcgtcgataac
gttgatattccggccgcctcgcgccgcggtatcattgtgatgaacacgccgttcggcaat
tccatcacgacagctgaacacgctattgcgctgatgtttgccgttgcccgccagcttcct
gctgctgatgcctccacgcaggctggcaagtgggaaaagtcgaagttcatgggcgttgaa
atcaccggcaaggtgctgggtgtgatcggcgccggcaacatcggcggcattgtctgcaag
aaggcaattggcctgggcatgcatgtcatcgcttacgaccccttcctgtcggcagaacgc
gcccaggaaatgggcgtgaagaaagttgagctggacgagctgctggctcaggctgatttc
atcacgctgcacgtaccgatgaccgataagacccgcggcattctcggcaaggaaaacctt
gccaagaccaagcccggcgttcgcatcatcaactgcgcccgtggtggtctggtggatgag
gccgctttggccgaagccatcaagtctggccatgttgccggtgctggttttgacgtgttc
gaagtcgagcctgccaaggaaagcccgctgtttggcttgccaaatgtggtttgcaccccg
catctgggcgcatccaccacggaagcgcaggaaaatgttgctttgcaggttgccgagcag
atgtcggattatctggtcaacggtgccgtttccaacgccatcaacatgccttcgattact
gctgaagaagcaccgcttctgaagccgttcattcggttggctgatgttctcggcgctttc
gtcggccaggtcaccgatggtgccatcaaggaaatcgaaatcctctatgatggccagacg
gccaccatgaacaccaaggcgctgacgtctgcgctgctggcaggcttgatccgcgcccaa
gtttcggatgtcaacatggtgtccgcgccgatcatgatcaaggaaaagggcattgtcctc
tccgaagtcaagcgcgacaagacaggcgtttacgatggctatatcaagctgacggtgaca
accgaaaagcaaacacgctcgattgccggtaccgtgttctcggatggcaagccacgcttc
atccagatcaagggcatcaatctcgacgccgatgtcggtccacacatgatctacatttcc
aacaccgacgttcccggcatgatcggcttcatgggcaccacgctcggcaatgctggcgtt
aatatcgccaacttccagctgggccgtgaaaaagaatccggcgatgcgattgcgctgctc
tatgtcgatggtcctgtcgaacaggctgttctcgatcagctgacggccaatgccgcgatc
aagcaggctcggcttctgacgtttgcagtcgaataa
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