Agrobacterium vitis VAR03-1: RvVAR031_31980
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Entry
RvVAR031_31980 CDS
T08810
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_31980 (sbcC)
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RvVAR031_31980 (sbcC)
Archaeal homologous recombinant proteins
RvVAR031_31980 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BCH55588
LinkDB
All DBs
Position
1:3508336..3511410
Genome browser
AA seq
1024 aa
AA seq
DB search
MRPVRLVMQAFGPYAGRQSIDFRDAVAAGLFGIYGQTGSGKSTIFSAMTFALFGEAARAE
QDTISLRSDHASPDLATEVEFVFDLGARRYVIRRRPEQMRPKQRGGGETRDAHEAWLFDA
TGLGEHEITAAQPGKVLAEKKIGLVREKITDLLGYGPEQFKQIVLLPQGRFEAFLSAKTQ
ERQDILSALFDVSLYRRLAAKLKSDAESAERLVREERAVCLRRLGADGFDSMQALVDGIA
EATSSLTDRQQATLHCRLEADAAHAALQAAKDTDNLFKSMDAARQARQKTLDQAADMAAL
QAQVTAAERARTLADAENRVIEAQRDCKDAQAALSLATQIQTSTQATAQQAQATYLQHLQ
SKSEIETLRRTIDQLERDRDVLEKATSLTASVEGAKRRLQEEHAAFQTAKAALDDLTSKQ
QAREQALKQARLTHERRQSLTASLAALQAQVKQAEIVERAEKDLQQARQQLNYSTNIHTE
RQAQTTKTAALFDQAERRLASAQALHLAAKLAPGLPCPVCGATDHPAPAIGDSAEAGLDK
AFREAKQALEKARLDEQHSATAHASAQATVDERQGRLADLERPERPIQDLRQDMEDMQHD
LRGLGPAIDIAAAETTLENLGKAITDAQARLDQHRDRLAALKTETSNGETRLAEMLSGIA
THLRDRAALERQLQQSKALMTSRETALKRSEEAATATREAALSAHKDSEAAENILTERQA
RFEKENQGFEDRLRDAGLTRDDLHRLKPAIAALERDKATIADHERQLQRDSEKLLELETA
LTGKQPPDLLAHQEAFSLAEAAFDTAVRLRAATAARLDHLQKLQQELASIAKRLDEAEAT
SGPLRELAGLFDAQNRQKLKLETFAIGAMFEQVLQAANLRLGPMTNGRYRLERDIESGGR
GKRGLGILAFDIHTGKARPTATLSGGETFIAALALALGLADVVESASGKVRLDTIFLDEG
FGSLDTENGSGTLDLVLQALNSLASQNRTVGLISHVPLVQEAIPNGFYVRKDSDGSHVEA
RGIM
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgagacctgtccgcttggtgatgcaggcctttggcccctatgccggacgccaatccatc
gattttcgcgacgcggtcgctgctggcctgttcggcatttacggccagacgggatcggga
aaatcgacgattttcagcgccatgacctttgccctgttcggcgaagcggcgagagccgag
caggacaccatctcgctgcgctccgaccatgcttcgcccgacctagcaactgaggtggaa
ttcgtattcgatctcggcgcccgccgctatgtcatccgccggcgtcccgaacagatgcgg
ccaaaacaacgcggcggtggcgaaacccgggacgcccacgaggcctggctgttcgacgcc
accgggctcggtgaacatgagatcaccgccgcccaaccaggcaaggtgctggccgaaaaa
aagatcggcctggtccgcgaaaaaatcaccgatctgctcggctatggtcccgagcagttc
aagcagatcgtgcttctgccgcagggccggttcgaggcctttctttccgccaaaacccag
gaacggcaggatattctcagcgccctgttcgatgtgtcactctatcgccggctggcggca
aaactgaagagcgatgccgaaagcgccgaacggctggtgcgcgaggaacgcgccgtctgc
ctgcgccgcctcggtgccgacgggttcgacagcatgcaggctctggtggatgggattgcc
gaggcgacatcatcgcttaccgaccgtcagcaagcgacgctgcattgtcggcttgaggcg
gacgccgcccacgctgcgctgcaagcagcgaaagataccgataacctgttcaagtccatg
gacgccgctcgccaggcacggcagaaaaccctggaccaggccgccgacatggccgcgcta
caagcgcaggtcacagccgccgaacgcgcacggacactggccgatgccgagaaccgagtg
atcgaggcacaacgcgattgcaaggacgcacaggccgcgctgtctctggcaacgcaaatc
cagacctcgacccaggcaaccgcacaacaggcgcaagcgacctaccttcaacacttacag
agcaaaagcgaaatcgaaacgctgcgccggacaatcgatcagttggaacgcgaccgggat
gtgctggaaaaagccaccagcctcaccgcatcagtcgagggggccaaacggcgcctccag
gaggaacacgcggcgtttcaaaccgcaaaggccgctctcgatgatttgaccagcaaacaa
caggcccgagaacaagcattgaaacaggcgcgcctgacccatgagcgcaggcaatcattg
accgcaagccttgcggccttgcaggcgcaagtgaagcaggccgagatcgtggaacgggct
gaaaaagatctgcaacaggcccgtcaacagctaaactatagtacaaacattcataccgaa
cggcaggctcagaccaccaaaaccgcagccctgttcgatcaggccgaacgccggctcgcc
tcagcacaagcgctccatctggccgcaaagctggcgcctggtctcccctgccctgtttgt
ggcgcgaccgaccatcccgcccctgcgataggtgacagtgccgaggccgggctggacaag
gcctttcgcgaagcgaaacaggccctggaaaaggcgcgtctcgacgaacagcacagcgcc
accgcccatgcctctgcgcaagccaccgtcgatgaacgccaaggcaggctggcggatctg
gagcgcccggagcgccctatccaggatctgcgccaagacatggaagatatgcagcacgac
cttcgcgggcttggcccggccatcgatatcgccgcggctgaaaccacgctggaaaatctt
ggaaaagccatcaccgatgcgcaagcccgcctggaccagcaccgggaccggctggctgcg
ctgaagaccgagaccagcaatggagaaacacggctcgccgaaatgctctccggcatcgcg
acgcatctgcgcgatagagcggccctggagcgccagcttcagcagtcgaaggccttgatg
acaagccgggaaaccgcattgaagcgcagcgaagaggccgccacagcgacccgcgaagcg
gcgttgagtgcacacaaggacagcgaagccgccgaaaacatcctgaccgaacgacaagcc
cgcttcgaaaaggaaaatcagggtttcgaggatcgcttgcgcgacgctggcctgacgcgc
gacgatctgcaccgcctgaaacctgccattgctgcgctagagcgtgataaagcaacgata
gcggaccacgaacgccaattgcagcgcgacagtgaaaaactcttggaattggagacagcg
ctcacgggtaagcagccgccggaccttctcgcccatcaagaggcgttttcgctggctgaa
gccgcgttcgatacagccgttagactacgtgcggcaacggcggcccggctcgatcacttg
caaaaattgcagcaagagcttgccagtattgctaaacggctggacgaagccgaggcaaca
tccggtcccctgcgggagttggctggcctgttcgacgcccagaaccggcaaaagctgaaa
ctggaaaccttcgccatcggcgcaatgttcgaacaggtcttgcaggccgccaacctgcgg
ctgggtccgatgaccaatggtcgctacaggctggaacgcgacattgaatccggcggacga
ggcaagcgcggtctgggaattcttgccttcgatatccataccggcaaggcgagacctaca
gcgacgctttccggtggagaaaccttcattgccgccctggcgcttgccctgggcctggca
gacgtggtcgaaagcgccagtggcaaggtgcggttggatacgattttcctcgatgaaggc
tttggcagcctcgataccgaaaacggctcaggcacacttgatctggtcttgcaggcattg
aatagcctcgccagccagaatcgcactgttggattgatatcccatgttccgcttgttcag
gaagcgatcccgaatggtttttacgtcaggaaggacagcgatggcagccatgtggaagcc
cgaggcatcatgtga
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integrated database retrieval system
