Agrobacterium vitis VAR03-1: RvVAR031_34360
Help
Entry
RvVAR031_34360 CDS
T08810
Name
(GenBank) hypothetical protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_34360
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avf02000
]
RvVAR031_34360
Transporters [BR:
avf02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
RvVAR031_34360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
EPSP_synthase
Rrn11
PIK3CG_ABD
Motif
Other DBs
NCBI-ProteinID:
BCH55826
LinkDB
All DBs
Position
2:182379..183596
Genome browser
AA seq
405 aa
AA seq
DB search
MNTHNPPASFPAPVLHTEGKPRLRVLGTAISLLEPLRIQAQQDLGIEVVFDNNDFLTTQH
KAAQAPESYDIYDQCFHNLDIVWYWRAIQPIELKRIDLWNEISDLTKTGRLEPSAQLGKG
DAPVKKLFVQPDLSLGENPTGHISMLPTTHNFDSFAYRSDLVKSPRSVCSWASLLEETWA
GRVALVDEPAIGIFDAALAAEAAGLMRFDNIGNMTVTEIDRLIAILTEKKKSGFFRDFWR
TAEDAATLMARGRTDIQSMWSTGITILSGQGMAVEQAVPVEGYRAWHGGLCLSRSLEGRI
LDVAYDYLNWWISGLPGAVVARQGYYMSTPQRSKAYLSTAEWDYWYGGLPAAQDLPGPDG
AMRIKAGEIRSGGSYWQRANRIAVWNTTMDEHNYLVRRWLQLMAA
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaacacccataatccaccggcttcctttcctgcgcccgtccttcataccgaaggcaag
ccgcgtcttcgggtgctcggcacggcgatttcgttgctggagccgctgcgcattcaggcg
cagcaggatctcggcatcgaggtcgtgttcgacaataacgacttcctgaccacccagcac
aaggcggcgcaggcacctgaaagttacgacatctacgatcagtgctttcataacctggat
attgtctggtactggcgggccatccagccgatagaactgaagcgtatcgacctctggaac
gagatttccgatctcaccaagaccggccggctggagccgagtgcccaactgggcaagggc
gatgcgccggtcaagaaactgttcgtccagccggatctttcactgggagaaaatccgacc
ggccatatttccatgctgcccaccacccataatttcgacagtttcgcctatcggagcgat
ctggtgaaaagccccaggtccgtgtgcagttgggcaagcctgctggaggagacctgggca
ggccgggtggcgctggtggatgagccggccatcggtatcttcgatgcggctcttgctgcc
gaggcggcgggcctgatgcggttcgacaatatcggcaatatgaccgtgactgagatcgac
cggctgatcgccatcctgaccgagaagaaaaagtccggatttttcagggacttctggcgc
accgccgaggatgccgcaaccctgatggcgaggggacgcaccgatatccagagcatgtgg
tccacaggcattaccatcctgagcggccagggcatggccgtggagcaggcggtgccagtg
gaaggctaccgtgcctggcatggcgggctttgcctgtcgcgcagccttgaaggccggata
ctggacgtggcttacgactatctcaactggtggatttccgggttgccaggcgcggtcgtt
gcacggcaaggctattatatgtccacgccgcagcgctcaaaggcatatctgagtacggcg
gaatgggattattggtacggcggcctgcccgccgcgcaggatttgcccggacctgatggc
gcgatgcggattaaggctggcgaaatccgcagcggtgggtcttactggcagcgtgccaac
cgtatcgcggtgtggaacaccaccatggatgaacataattacctggtacgtcgctggctt
cagctgatggcggcataa
DBGET
integrated database retrieval system
