Agrobacterium vitis VAR03-1: RvVAR031_34620
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Entry
RvVAR031_34620 CDS
T08810
Symbol
thiC
Name
(GenBank) phosphomethylpyrimidine synthase
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00730
Thiamine metabolism
avf01100
Metabolic pathways
avf01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
RvVAR031_34620 (thiC)
Enzymes [BR:
avf01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
RvVAR031_34620 (thiC)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
BCH55852
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Position
2:213927..215759
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AA seq
610 aa
AA seq
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MNIAPQFPTPEVTTGTLPASAKVHIAGEIHPQIRVPMRQITLHPTSGEPPVNVYDSSGPY
TDPNATIAIDAGLPRIRAEWVVARGDVETYAGRHVKPEDNGFASGEKLTPEFPVRNAPLK
AKPGQAVTQLAYARAGIITPEMEFIAIRENIGRKAAQDALIRDGESFGASIPDYVTPEFV
RQEVAMGRAIIPANINHPEAEPMIIGRNFLVKINANIGNSAVTSSMAEEVEKMVWAIRWG
ADTVMDLSTGRNIHNIRDWIIRNSPVPIGTVPLYQALEKVHGIAENLTWDVFRDTLIEQA
EQGVDYFTIHAGVRLSYIHLTVNRVTGIVSRGGSIMAKWCLHHHKESFLYEHFDEICDIC
RAYDVSFSLGDGLRPGSIADANDAAQFAELETLGELTKIAWAKDCQVMIEGPGHVPMHKI
KENMDKQLKTCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWYGTAMLCYVTPKEHLG
LPDRNDVKTGVITYKIAAHAADLAKGHPAAQVRDDALSRARFEFRWEDQFNLSLDPDTAR
SFHDETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKEGLEAMAAKYRDGGDLYMPV
SDEEKPSAGE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgccccacagtttccgacccccgaagttaccaccgggacgcttcccgcctcc
gccaaggtccatattgccggagagatccaccctcagatccgcgtgccgatgcgccagatc
acgctgcaccccacctcgggcgagccgccggtcaatgtgtatgatagttccggcccctat
accgatccaaacgccaccattgccatcgatgcaggcttgccgcgcattcgcgccgaatgg
gtggtcgcacgcggtgatgtcgagacctatgccggacgccacgtcaagcctgaagataat
ggctttgcatcaggcgaaaagctgacgcccgaatttccggtgcgcaatgcgcccttgaag
gcaaaacccggccaagccgtaacccagcttgcctatgcccgcgccggcatcatcaccccg
gagatggagttcattgccatccgtgagaatattggccgcaaagctgcccaggacgctttg
atccgcgatggcgaaagctttggcgcatccatcccggattacgtcacaccagaatttgtc
cgtcaggaagtggccatgggccgcgccatcatcccggccaatatcaaccacccggaagcc
gagccgatgattatcggtcggaatttcctggtgaagatcaacgccaatatcggcaattcc
gccgtcacctcctcgatggccgaggaagtggaaaaaatggtctgggcgatccgctggggc
gccgatacggtgatggatctctccaccgggcgcaacattcacaatatccgcgactggatc
atccgcaattccccggtgccgattggtacggtgccgctctatcaggcattggaaaaagtg
catggcatcgccgaaaacctgacctgggacgtgttccgcgacacactgatcgaacaggcg
gagcagggggtggattatttcaccatccatgcaggagtgcgcctctcctatatccacctt
accgtcaaccgggttaccggcattgtctcgcgtgggggttcgatcatggccaagtggtgt
ctgcatcatcacaaggaaagcttcctctacgagcatttcgatgagatctgcgatatctgc
cgggcttatgacgtgtcgttctcgctcggcgacggccttcgccccggctcgattgccgat
gccaatgatgccgcacaatttgctgaactggaaacgctgggcgaactgaccaaaatcgcc
tgggcgaaggattgccaggtgatgatcgaaggccccggccatgtgccgatgcataagatc
aaggagaatatggacaagcagttgaagacctgcggcgaggcacccttctacacgcttggt
ccgctgaccaccgacatcgctcccggttacgaccatattacctcgggcatcggggcggcg
atgatcggctggtacggtacggccatgctctgctacgtcacacccaaggagcatctgggg
ctaccggatcgcaatgacgtcaagacaggtgtcatcacctacaagatcgcagctcatgcc
gccgaccttgccaagggtcatccagcggcccaggtccgtgatgatgcactgtcgcgcgcc
cgtttcgaattccgctgggaagaccagttcaacctgtcgcttgatccagacacggcccgg
tcctttcacgacgaaaccctgccgaaggaagcccataaggttgcgcatttctgctcaatg
tgtggcccgaaattctgttcgatgcggatttcccatgatatccgcgccgaggcccaaaaa
gaggggctggaagccatggcggccaaatatcgcgatggcggcgatctctacatgccggtc
tccgatgaggagaaaccgtcggcgggagaatga
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