Agrobacterium vitis VAR03-1: RvVAR031_34890
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Entry
RvVAR031_34890 CDS
T08810
Symbol
secD2
Name
(GenBank) protein translocase subunit SecDF
KO
K12257
SecD/SecF fusion protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02024
Quorum sensing
avf03060
Protein export
avf03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
RvVAR031_34890 (secD2)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RvVAR031_34890 (secD2)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_34890 (secD2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
avf02044
]
RvVAR031_34890 (secD2)
Secretion system [BR:
avf02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
RvVAR031_34890 (secD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SecD_SecF_C
SecDF_P1_head
SecD_1st
Sec_GG
ACR_tran
MMPL
Sterol-sensing
GGDEF
Motif
Other DBs
NCBI-ProteinID:
BCH55879
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All DBs
Position
2:251484..254003
Genome browser
AA seq
839 aa
AA seq
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MKTSPWLVATYVVIIAFGILTALPNILSPNTLNSFPSWFPKDKVALGLDLRGGSHLVLEV
DSADLVQERLQSLIQDSRRALRDDGVDAATVRKSGSALIVILQSAEQRAAALTALGKLAH
PVGLTGAPDLAFAGDGTTISITLAEAGITDRANAGVEQSLEIIRQRIDQVGVAEPTIQRI
GGDRILVQLPGTQDPARIRELLGSTAKMSFHMLSENTTDGTAVPRGVTMLKDDEGRAYPV
DDRVELAGDRLTDARVGFDPNTNEPLVSFRFDTAGAARFAEITRVNVGKPFAIVLDDKVL
SAPVIREPITGGSGQISGNFTVESATDLAALLRAGALPVKLTVIEERTVGADLGADAIKM
GVYTGLIGFALVVGFMIVLYGGWGIIANLALGLNVILTFACLSLIGATLTLPGIAGIVLG
IGLAVDANVLINERIREETRKGRSAMAALDAGFRRAYSTIIDSNVTALIATLLLFWFGSG
PVRGFAITMGLGIAISMFTAVSVVRVVMLAIVRRYKLKRLDIKPLLPVQLIPDGTRIRFM
KARFLGIGISAFLSIASLILFFTPGLNYGVDFRGGIQLEVVTQDRADLAAFRSGLDGLGL
GDVTLQEFGDARHLLVRVERQPGGEEAQTTAVERLRTEVKVIDATASVERTEVVGPKVSG
ELATAGILSVVLASLAMLGYIWARFEWPFAVGAIATLILDVTKTIGFFALTGLDFNLTAI
AALLTLVGYSVNDKVVVYDRMRENMRLYKTMPLRELIDLSINETLARSLYTSATAFLSLL
PMAIWGGSAVESFAVPMIFGIAIAASSSVFIAAPILLFLGDWRRKRAAAPEKPAGSVEA
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacctctccctggcttgtggccacctatgtggtcatcatcgcctttggcatccta
acggcactgccgaatattctctcgccaaacactctcaatagctttccatcgtggttcccg
aaggacaaggtcgcacttggccttgaccttcgcggcggctctcatcttgtgcttgaggtc
gatagcgccgatctggtgcaggagcgattgcaaagcctgatccaggattcgcgtcgggcg
ctgcgcgacgatggcgtcgatgcggcgaccgtgcgtaaaagtggctcggcgctgatcgtg
atacttcaatcggcagagcaacgagccgcagctttgactgccttgggtaagcttgcccat
ccggtcggcctgacgggcgcgcctgatctggcatttgcgggtgatggcaccaccatatcc
ataacgcttgccgaggctggaattaccgaccgcgccaatgccggggtggagcagagcctg
gaaatcatccgccagcgtatcgaccaagttggcgttgccgagccaacgatccagcgcatc
ggcggcgatcgcattcttgtgcagcttccaggtacgcaggacccggcgcgtattcgtgaa
cttcttggctctactgccaagatgagctttcacatgctgtcggaaaataccacggatggc
acagccgtaccgcgcggcgtcactatgctgaaggatgatgagggccgcgcctatccggtt
gatgaccgggtggaactggcaggcgaccgcctgactgatgcccgtgtcggctttgatccg
aataccaatgagccgctggtcagcttccgcttcgatacggcgggtgcggcgcggtttgcc
gaaatcacccgtgtcaatgtcggcaagccctttgccatcgtgctggatgacaaggttctg
tcggcccctgtcatccgtgagccgattaccggtggttccggccagatttccgggaatttc
acggtggaaagcgcaactgaccttgcggcactgctgcgcgccggagcgctgcccgtcaaa
ctgaccgttattgaagagaggacggttggcgctgaccttggcgcagacgctatcaagatg
ggcgtctataccgggttgatcggctttgccctggtcgtcggctttatgatcgtgctctac
ggcggttgggggattattgccaatctggccctcggtctcaatgtcatcctgaccttcgcc
tgcctgtcgctgatcggggcgacactgaccctgccgggtattgctggtatcgtgcttggc
atcggccttgcggttgacgccaacgtgctgattaatgagcgaattcgggaagaaacccgc
aagggtcggagcgccatggcggcgctggatgccggtttccgccgggcttattctaccatt
atcgatagtaatgtgaccgccctgatcgccacgctgttgctattctggttcggctccggc
ccggttcgcggttttgctatcaccatgggtctgggcattgccatatcgatgttcacagcg
gtttcggtggtgcgtgtcgtcatgctcgccatcgtcaggcgttacaaactgaagcgtctc
gatatcaagccgcttctgcctgtccagcttatccctgacggaacgcgcattcggttcatg
aaggcgcgtttccttggtatcggcatttccgccttcctttcgattgcctctctcatcctg
ttcttcacgccgggcttgaattatggcgtggattttcgcggtggtatccagcttgaagtg
gtgacccaggatcgcgccgatctcgccgccttccggtccggcctggacgggcttgggctg
ggcgatgtcacccttcaggagttcggcgatgctcgtcacctgctggttcgcgtcgagcgg
cagccgggcggggaagaagcgcaaaccacggcggtggagcggctgagaaccgaggtaaag
gttatcgatgcaacggcgtcggtagagcgcaccgaagttgttggcccgaaggtgtcggga
gaactggcgaccgcaggtatcctctcggtcgtcctcgccagcctggccatgctgggctat
atctgggcgcgtttcgagtggccttttgcggttggcgcaattgcgacactcattctcgac
gtcaccaagacgattggctttttcgcgctcaccgggcttgatttcaacctgacggctatc
gcggcgctgctgaccctggtcggttactccgtcaatgacaaggtcgtggtctatgaccga
atgcgggagaatatgcggctttacaagacgatgccgctgcgtgaactgatcgatttgtcg
atcaacgaaacgctggcccgcagcctgtatacatcggccactgcctttctgtcgctgttg
cccatggccatctggggcggtagcgcagttgagagctttgccgtgccgatgattttcggc
attgccatcgcggcctcatcgtcggtgtttattgccgcaccgatcctgctgttcttaggc
gactggcgccgcaagcgggcggcagctccagaaaagccagccggttccgtagaggcttga
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