Agrobacterium vitis VAR03-1: RvVAR031_35110
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Entry
RvVAR031_35110 CDS
T08810
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RvVAR031_35110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avf03019
]
RvVAR031_35110
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_35110
Enzymes [BR:
avf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RvVAR031_35110
Messenger RNA biogenesis [BR:
avf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RvVAR031_35110
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RvVAR031_35110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
GD_AH_C
Motif
Other DBs
NCBI-ProteinID:
BCH55901
LinkDB
All DBs
Position
2:277168..279024
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AA seq
618 aa
AA seq
DB search
MPSSQPRHEPTFDHGERHPLSILKRVYGYPAFRGKQAEVVQQVVAGGDAVVLFPTGAGKS
LCFQIPALCRDGVGVVVSPLIALMRDQVEALKQVGVRAAALNSSLSREEFVEVRRAIADG
TLDLLYVTPERIVTPAFKDVIGSAKIALFAIDEAHCVSQWGHDFRPEYRELGKLAEAYPG
VPRMALTATADPHTRDDIIDKLGLQSARVFTTSFDRPNIAYEIVERDQPRQQLLRFLARH
EGESGIVYCLSRAKVEDTAEWLNTQGVRALAYHAGMDRVLRDANQDAFLKEENLCLVATV
AFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSDVWMAYGMADVIQRGRMIDG
GTSAEEVKRVERAKLNALLAICETPGCRRQSILAHFGEVHPGACGNCDTCLKPVETWDGT
DAAIKALAAIYRTGERFGTGHVIDVLLGNENDKTARFGHVDMPVFGAGKDLPLKTWQSVF
RQLLAAGLLRVDHDAFGALKLEPEARAVFKREREVRFRKDRPTKGKAARTASPAAAKAKS
ALEGADMELFEALRAARMAIAKDLSVPPYVVFPDMTLIAFATERPDSREALLGISGVGQS
KLERYGDAFLEVIQAYER
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaagccagccccgccacgaaccgacattcgatcatggtgaaagacatccgctg
tccatcctgaagcgggtctatggctatcccgcctttcgcggcaagcaggccgaggtggtt
cagcaggtggtggccggtggtgatgcggtcgtgctgtttccgaccggtgccggtaaatcg
ctctgcttccagatcccggcgctgtgccgcgatggagtcggcgttgtcgtttcaccgctg
attgcgctgatgcgcgaccaggtggaggcgctgaagcaagtgggtgtgcgggcggcggcg
ttgaattcgtccttgtcgcgggaggagtttgtcgaggtgcggcgcgccattgccgatggc
acgctcgatctcttgtatgtcacgccggagcggatcgtcacgcctgccttcaaggatgtg
atcggttctgcgaagattgccttgtttgccatcgacgaggcccattgcgtctctcaatgg
ggccatgatttccgcccggaatatcgggaactgggcaagcttgccgaggcctatcccggc
gtgccgcgcatggcgttgacggcgactgctgatcctcatacgcgcgatgacattatcgac
aagctcggcctgcaatcagccagggtgtttaccacctccttcgaccggcccaatatcgct
tatgaaatcgtcgagcgcgaccagccccgccagcagctcctgcggtttctggcccgtcat
gaaggcgagagcggcattgtctattgcctgtcgcgcgccaaggtggaggacacggcggaa
tggctcaatacgcaaggggtgagggctctggcctatcacgccggcatggatcgggtgctg
cgcgatgccaaccaggatgcgttcctgaaagaggaaaacctttgccttgtcgcaaccgtc
gccttcggcatgggtatcgacaagccgaatgtgcgctatgtggcgcatcttgatctgccg
ggttctgtcgaggcctattaccaggaaaccgggcgtgccggacgtgatgggctgccatcg
gatgtatggatggcctatggcatggccgatgtcatccagcgcgggcggatgattgatggc
ggtacctcggcagaggaggtcaagcgggtcgagcgggcaaagttgaatgcgctgctggca
atttgcgaaacccccggctgccgtcgtcagtcgatcctggcgcatttcggcgaagtgcat
cccggtgcctgcggcaattgcgacacctgcctgaagccggtggaaacctgggacggaact
gacgcagcgatcaaggcgctggcggcgatctaccggaccggggagcgtttcggcaccggg
catgtcatcgatgtgctgctggggaatgagaacgacaagaccgcccgttttggccatgtt
gacatgccggttttcggtgcgggcaaggatctgccgttaaaaacctggcaatcggtgttc
cggcaattgctggccgccggtctgctccgggtcgaccatgatgctttcggcgcgttgaaa
ctggagccggaagcgcgagctgttttcaagcgagagcgcgaagtgcggttccgcaaggac
cgcccgaccaagggcaaggcagcacgcactgcgtcacccgcggccgcaaaggcgaaatcg
gcgctggagggggccgatatggaattgttcgaggcgctaagggcggcgcgcatggcgatt
gccaaagacctttccgtgccgccctatgtcgttttcccggatatgacgttgattgccttt
gcaacggaaaggcctgatagccgggaggcgttattgggtatttccggcgtcggacaatcg
aagctggaacggtatggcgacgctttcctggaggttatccaggcgtatgagcgatga
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