Agrobacterium vitis VAR03-1: RvVAR031_36690
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Entry
RvVAR031_36690 CDS
T08810
Symbol
dctD
Name
(GenBank) Fis family transcriptional regulator
KO
K10126
two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RvVAR031_36690 (dctD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
avf02022
]
RvVAR031_36690 (dctD)
Two-component system [BR:
avf02022
]
NtrC family
DctB-DctD (C4-dicarboxylate transport)
RvVAR031_36690 (dctD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_5
AAA_16
AAA_2
Mg_chelatase
AAA
HTH_8
T2SSE
AAA_22
AAA_7
RTP1_C2
Motif
Other DBs
NCBI-ProteinID:
BCH56059
LinkDB
All DBs
Position
2:419166..420542
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AA seq
458 aa
AA seq
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MTSSQATTTNNVILIDNDRDLLAATGQTLELAGFSVQAFSAPLEALRLISSDFRGVIVSD
IRMPDIDGLELFSRVKRLDSDLPVILVTGHGDIAMAVQAIKDGAYDFITKPFATDRLQQS
VHRAAEMRRLVLENRKLRQVADAAQDGLPLIGQTPAMERLRRTLRQIADTDVDVLVTGET
GSGKEVVASLLHSWSRRAKGNFVALNCGTLPESMIESELFGHEAGAFTGAQKKRIGRIEH
ASGGTLFLDEIESMPAATQVQMLRVLEMREVSPLGINEVRPVDLRVVAAAKVDLSDPAQR
GEFREDLYYRLNVVTLTIPPLRERRDDVPLLFAHFIERAASRFRREPPPVSAGVERYLRD
HDWPGNVRELTHFAERFVLGLEDMDAAGGIAVVADLPGLSLPERLDRYEADIMRETLSHY
EGDVRKTIEALKIPRKTFYDKLQRHGIVRKAFAGGEEG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcatcgcaggcgacgacgaccaataatgtcatcctgatcgacaatgatcgggat
ctgctggcggcgacagggcagacccttgagctggcaggattttccgttcaggcattctca
gcgccgctggaggcgcttcgtctaatttccagtgattttcgtggcgtgattgtttccgat
attcgcatgcctgacatcgatggcttggaattgttcagcagggtcaagagattggattcg
gatctgccagtcattctggtcaccggccatggcgatattgccatggcggtacaggccatc
aaggatggggcctacgatttcatcaccaagccctttgccaccgaccgactacaacagagc
gtccaccgcgctgcggaaatgcgacggcttgtgctggaaaatcgcaagctgcgtcaggtg
gccgatgcggcccaggatggattgccgctgattggtcagacgccggccatggaaaggcta
cggcgcacgttgcgccagatcgccgacaccgacgtcgatgtgctggtgacaggggaaacc
ggcagtggcaaggaagtggtggcgagcctgctacacagctggagccgacgtgcaaagggc
aattttgtcgctttgaactgcggcaccctgccggaaagcatgatcgagagcgagttgttc
ggccatgaagccggcgcctttaccggtgcgcagaaaaagcggatcggccggatcgaacat
gccagcggcggcacattgtttctcgatgaaatcgagagcatgcctgcggcgacccaggtg
cagatgctgcgagtgctggaaatgcgcgaagtctcgccactcgggatcaacgaagtgcgc
ccggtggatctgcgcgtggttgctgcggccaaagtcgatctgagtgatcctgcccagcgc
ggtgaattccgcgaggacctttattaccgcctgaatgtggtgacgctgaccatcccgccg
ttgcgcgaacgccgtgatgacgtgccattgttgtttgcccatttcatcgagcgcgccgct
agccggttccgtcgcgagccaccaccggtgtcagctggtgttgagcgttatttgcgggac
cacgactggccgggaaatgtgcgtgaattgacacattttgccgaacgcttcgttcttgga
ttggaagatatggatgcagcgggcgggattgccgttgttgctgacctgcctggtttatcc
ttgccggaacggcttgatcgctatgaggcggatatcatgcgcgagacccttagccactat
gagggcgatgtgcgcaagaccatcgaggccctgaaaattccccgtaagaccttttacgat
aaacttcagcgtcatggcattgtgcgtaaggcatttgccgggggcgaggaaggctga
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