Agrobacterium vitis VAR03-1: RvVAR031_38790
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Entry
RvVAR031_38790 CDS
T08810
Name
(GenBank) hypothetical protein
Organism
avf
Agrobacterium vitis VAR03-1
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
Motif
Other DBs
NCBI-ProteinID:
BCH56269
LinkDB
All DBs
Position
2:654775..657930
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AA seq
1051 aa
AA seq
DB search
MIKTSSKNFGGTLLRNKNIFPGIVKYISKSLVFQSITVTAVVSCSGVSLAQDVVLDSGNT
TWTSDTLVDGDLYVGYNNKDIGLTIANGAKVYSTNGYVGYRTGSSGTVTVSGPGSSWIIP
RVNYVLANDITVNQNSTLNIENGGNVDAKYFTFASTSQLNVTGNGSTLTADRISNSGTVL
VGNGGSINAIDAQFDGLPADGADNSLATFVVRGAGSKVTSTGTLTVGANTSIEDGGAIVA
QDVGIGTSGSFQNFVVTGAQSRMDVNGTLTVNGGYAPNSNISIADSANLNVKNGITMATG
GHLTIGGKIDLGNLVLGGEPKGQAAAAAGYINPDAVISFGSSERAYLNFNHTQTGYVFAN
ALTGDGNIKSMSGETILTGDLSKFEATDNLGGIIVDGGSTLVLASNLGTGVTNYDNVFAW
QTNIDVKNGTFNVKADTGAIRKNFLGSEYFSSNIDVWGDRNAGSAFGRLIGSGAVGNVTL
EKGALISPGNSDNAIGTFTVNGNLSFGEGSAYDVDIAGNGASDKIVVQTLKAWTGTDAQN
NPTYVDSAGKTSIANNVSVQVTALDAATSYQNGQTYTILSSAGGIQGQFAQAISKSAFLD
VALAQTSNQVDLTIAVKDTGTPNPGTPNPGNPDPGTPNPGNPDPGTPNPGNPDPGTPNPG
TPNPGTPSTGLFDSVAVTGNQRNVARALNTLQQSGQPLALYNSLLPLSAEEARHAFESLS
GEVHASALGTLVTSSTLLRNSVNDRMRASFNSVASRPTPVMAYADGDDRFGTANKDIPLF
TAWGQGFGTWNSIDGNGNAADLSSSTGGFVAGLDVPVSADWRVGAVGGYSRSSFDASDRS
SFGHSDNYHLGMYAGAQYGELSFRSGLTYTWHQVSTNRSVAFSGFNDHLKADYDAGSFQA
FGELGYRIDVSTVAFEPFANLTHVNVQRDGFNERGGIAALSSPSDSLDTTLTTLGLRASS
DFMLGGYIAKARGMLGWQHAFGDTDPTSRLAFVGSQSYVVSGTPLTKDAAVVELAIDVGL
SDTATIGIGYSGEFGSNETSNSINAKLDVRF
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagacatccagcaaaaattttggcggtacactcttaagaaataagaacatcttt
cctggcatcgttaaatacatctcaaaatcgcttgttttccaatctattactgtaacagcc
gtggtttcctgttcaggcgtcagtcttgctcaagatgtcgtgcttgatagcggtaacacg
acctggacgagtgatacgctggtcgatggtgatctctatgtcggctataacaacaaagac
attggcctgacgattgccaatggcgcaaaagtgtacagcacaaatggttacgtaggctac
cggactggtagctcggggactgtcacggtgagcggtcccggttcttcctggatcattccc
agggtcaattacgtcttggcaaatgatattacggtcaatcaaaacagcactctcaatatt
gagaatggcggaaatgtcgatgcaaaatattttacgttcgctagcacgtctcagctgaat
gtgactggaaatggctcgaccttgacagcggaccgcatttccaattctggaacggtcctc
gtcgggaatgggggctcgatcaatgcgatcgacgcacagttcgatggcctcccggcggac
ggcgcagataacagtcttgcgacgtttgttgtccgcggcgctggttcgaaggtgacgagc
accggaactttgacggtcggtgccaatacaagcatcgaagacggcggtgctatcgtcgcc
caggatgttggaatcggcacaagcggcagctttcagaatttcgtggtcactggcgcccaa
tcccgcatggatgtgaatgggactttgacggtcaatggtgggtatgcacctaactcgaat
atatccattgccgatagcgccaacttgaatgtcaagaacggcatcacaatggcaacgggc
ggtcacctgaccattggcggcaagatcgatctgggaaatctcgtccttggaggggagccc
aaaggccaagcggctgccgccgctggctatatcaatccagacgccgttatttccttcggt
tcatccgagagggcatacctgaattttaaccacacccaaaccggatatgtttttgccaat
gcattgaccggtgacggaaatatcaagtccatgtcgggcgaaacaatcctgacgggggat
ctcagcaagttcgaggccaccgataacctcggtggaattattgtcgatggtggcagtaca
ttggttctggccagcaatctggggacaggggttaccaattacgacaatgtcttcgcatgg
cagacgaatattgatgtcaagaacggcaccttcaacgtcaaggcggacacgggcgctatc
aggaagaacttccttggaagcgagtatttttcatcgaatatcgatgtctggggcgatcgg
aatgctggcagtgcattcggacggctgatcgggtccggagccgtcggcaatgtcacactg
gaaaagggtgcactgatttcacccggaaattccgacaatgccatcggtaccttcacggtg
aacggcaacctctcctttggtgaaggttcggcgtatgatgtcgatatcgcaggaaatggc
gcgagtgacaaaatcgtcgttcaaaccctgaaggcatggaccggaaccgatgcccagaat
aatccgacctatgtggatagcgcgggtaaaacctcaatcgccaacaatgtatccgtgcag
gtgacagctctcgatgctgcaaccagctaccagaatggccagacctatacgattctgtca
tcggctggcggtatccaggggcagttcgctcaagccatttcgaagtcggcctttctggat
gtggcattggctcaaacgtcaaatcaggtcgatctcaccatcgcagtcaaggatacaggc
acgcctaaccccggaactcctaatcccggtaatcctgatcctggaactccaaatccgggt
aatcccgatccaggaacacccaaccctggcaaccccgatccgggaacaccaaaccccgga
acaccaaaccctggcacgccatcgaccggcctgttcgattccgttgcggtaactggcaac
cagcggaatgttgcccgggctttgaatacgttacagcagagcgggcagccacttgcgctt
tataacagcctcttgccattgagtgcggaagaagcgcggcacgcctttgaatcgctctca
ggcgaggtgcatgcgtctgccttgggaacgctggtcaccagcagcacgctgttgcgcaat
tcggtgaacgaccggatgcgggcatcgttcaactcggtcgcctcgcgtccaacgccagtc
atggcctatgccgacggtgacgacagatttggtacggctaacaaggatattccgctcttt
acggcctggggccagggcttcggcacatggaacagcatcgacggcaacggcaatgccgca
gacctgagttcgtccactggcggtttcgtggcgggtctcgacgttccggtctccgccgat
tggagagtgggtgccgtcggcggctatagccggtccagcttcgatgccagtgaccgctca
tcctttggccatagcgacaattatcatctcggcatgtatgccggagcccaatatggggaa
ttgtccttccgctcaggccttacctatacctggcatcaggtgtcgaccaatcggtctgtg
gcattctccggtttcaacgaccatctgaaggctgattacgacgccggcagcttccaggcc
tttggtgaactcggttaccgcatcgatgtcagcaccgtcgctttcgagccctttgccaac
ctcacccatgtcaatgttcagagagacggcttcaatgagcgtggtgggattgctgccttg
tcgagcccgagcgacagcctggacacgacactgacgacccttggcttgcgcgcctcttcc
gatttcatgctgggcggctatatcgcaaaagccagaggcatgcttggctggcagcacgcc
ttcggtgataccgatccaacctcacgcctggcatttgtcggtagccagagctacgttgtg
tccggtacgcctctcacgaaggatgcggccgttgtcgaactcgccattgatgtcgggctc
agcgataccgcaacgatcggcattggctattccggtgaattcggtagcaatgaaacctca
aacagcatcaacgcaaagctggatgtccgtttctga
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