Agrobacterium vitis VAR03-1: RvVAR031_40940
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Entry
RvVAR031_40940 CDS
T08810
Symbol
lacZ
Name
(GenBank) beta-galactosidase
KO
K01190
beta-galactosidase [EC:
3.2.1.23
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00052
Galactose metabolism
avf00511
Other glycan degradation
avf00600
Sphingolipid metabolism
avf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
RvVAR031_40940 (lacZ)
09103 Lipid metabolism
00600 Sphingolipid metabolism
RvVAR031_40940 (lacZ)
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
RvVAR031_40940 (lacZ)
Enzymes [BR:
avf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.23 beta-galactosidase
RvVAR031_40940 (lacZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_2_C
Bgal_small_N
Glyco_hydro_2_N
LacZ_4
Glyco_hydro_2
Glyco_hydro_2_N2
BetaGal_ABD2
RPE65
FlgD_ig
Motif
Other DBs
NCBI-ProteinID:
BCH56444
LinkDB
All DBs
Position
2:complement(862796..865822)
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AA seq
1008 aa
AA seq
DB search
MTTNTLPATAHLDWLSDPKVFAVGRLPAHSDHIVYPDEASAAAGSASPLRQSLDGTWKFA
SATSAAERPAGFHHQDFDRSGFGDITVPGAMQLQGHGRPQYVNTQYPWDGHEALALGQAA
EANRVGCYARTFRLDPALAGQRIILTFEGVETAFYVWLNGRFIGYAEDSFTPSRFDITDA
LIDGDNLLAVEVYHRSSGAWLEDQDFWRLSGIMRPVRLEAWPKLHIRDLFVTTDLADDFN
SGSLRLRLALDLAEESAGSLAVTLYDAKGETVLTTSLDAAAEMDIAMPIDAPHLWSAETP
HLYRLLLVLKDSNGATVEAVPQPIGFRRFEMRDGVMRLNGQRIVFRGINRHDFHPRRGRA
LTVEDMLWDVLFFKRNNINAVRTSHYPNRSEFYALCDQHGLYVIDEANLETHGTWSVETL
DLDKVLPGDRDEWRPAVLDRAANMLERDKNHPCVLIWSCGNESYGGSVIADMADWFRDRD
PSRLVHYEGVFHDRRFDARSSDMESRMYARPQDIEDYLRSNPSKPFVSCEYTHAMGNSCG
GMHLYTDLTYRYEQCQGGFIWEYIEQALYGSRPDGSEGLLFGGDFGDRPTDYSFCCDGII
TADRQLTPKVQEIKALYQPVRLIPDAHGVKVINDNLFLSLDAFYLCYHLLKDGVAIAEGR
ADIALAAQEQTYLRLSVPVTQQPGEYALQCSLRERHERAWAPADHEVAFGEHVWTVAGEK
PSPVSRPLTRAEGSYNLGISDGHSRTLFCRRFGGPVSLVNTAGVEFLERPPLPIFWRAPT
DNDRGAGFGFKFGSWRRASLDQKQASYAYRETGADYRFALPDSTMQATVSYRYEADGAIA
VTAHWPGDASLPSLPLFGLTIPMPARFDRFRYYGLGPEENHIDRAHGARLGIYERAVADN
VTPYVIPQESGNRTGVRLADLFDPDGNTLRFEAVDMPFELGVSPYTAFQLEAAARPYDLP
PANRTIVTLMARQMGVGGDDSWGALPHPQYMIEPGEPLTLTFRMRVMG
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaccaatactctgcctgccacagcacatctcgattggctttccgatcccaaggtt
tttgccgttgggcggctgcctgcccattccgatcatatcgtctatcccgacgaagcatcc
gctgcggcgggatctgcctcgccgcttcgccaaagccttgatggcacctggaagttcgcc
tccgccacctcggcagccgagcgcccggcaggcttccaccatcaggacttcgaccgcagc
ggcttcggcgacatcaccgtgcccggcgccatgcagttgcagggccatggccgcccgcaa
tatgtcaacacccaatatccctgggacggccatgaggcgctggcgcttgggcaggccgcc
gaggccaaccgggtcggttgctatgcccggacgttccgacttgacccggcccttgccgga
cagcggatcattctgaccttcgagggcgtagagaccgccttctatgtctggctgaatggc
cgttttatcggctatgccgaagacagtttcacgccctcacgcttcgatatcaccgatgca
ctgatcgacggcgataacctgctggccgtcgaggtctatcaccgctcttccggcgcctgg
ctcgaagatcaggatttctggcgtctgtcgggcatcatgcggcccgtgcggttggaagcc
tggccaaaactgcatatccgcgatctgttcgtcaccacggatcttgcagatgatttcaac
agtggctccctgcgcttgcggctggctcttgacttggcggaagagagcgcgggcagtctt
gccgtgacgctctacgatgccaagggtgaaaccgtcctaacaacgtccctcgatgccgca
gccgaaatggatatcgccatgcccatcgatgcgccgcatttgtggagcgccgagacgccg
catctctaccgcctgctgctggtcctgaaggacagcaacggcgcgacggtcgaggccgtg
ccgcagccgatcggttttcgccgctttgaaatgcgcgatggggtgatgcgcctcaatggc
cagcggatcgtgttccgtggcatcaacaggcatgatttccacccacgccgtggacgcgcc
ctgacggtcgaggacatgctctgggatgtgctgttcttcaagcgcaacaatatcaatgcg
gtgcgcaccagccactatccgaaccgcagcgagttctacgcgctctgcgaccagcacggc
ctttatgtcatcgacgaggcaaatctggaaacccatggcacatggtcggtcgagaccctg
gacctggacaaagtcctgcccggcgaccgcgacgaatggcgacccgccgttctcgaccgt
gccgccaatatgctggagcgcgacaagaaccatccttgcgtgctgatctggtcctgcggc
aatgagagctatggaggcagcgtcattgccgatatggctgattggttcagggaccgcgac
ccctcccgcctcgtgcattacgaaggcgtgttccacgaccgccgcttcgatgcgcgttcc
agcgacatggaaagccggatgtatgcacgcccgcaggacatcgaggattatctgcgcagc
aatccatccaagccttttgtgtcctgcgaatatacccatgcgatgggcaattcctgcggc
ggcatgcatctctataccgaccttacctatcgctatgagcagtgccagggcggctttatc
tgggaatatatcgaacaggctctctacggcagccgcccggatggcagcgaaggcctgctg
tttggcggagatttcggcgacaggccaaccgattacagcttctgctgcgacggcattatc
accgcggatcggcaattgaccccgaaagtccaggaaatcaaagcgctttaccagcctgtc
cggttgatcccggacgcgcacggcgtcaaagtgatcaatgacaacctgttcctaagcctc
gacgctttctatctgtgctatcacttgctgaaagatggtgtcgcgatagccgaagggcgg
gccgatattgcgcttgcagcccaggaacagacctatctgcgtctgtccgtgcctgtcacg
cagcagccgggcgaatatgccctgcaatgctccttgcgtgaacgccatgagcgcgcctgg
gctccggctgaccacgaagtggcgtttggcgagcatgtctggacggtcgcaggcgaaaag
ccaagcccggtttcccgccccctcacccgcgccgaaggcagctataatctcggcatttcc
gatggccacagccggaccttgttttgccgacgctttggcggaccggtatcgctggtcaat
acggcgggcgtagaattcctggaacgaccacccctaccgatcttctggcgcgcgccgacc
gacaatgaccggggtgcgggcttcggcttcaaattcggcagttggcgccgggcgagcctc
gaccagaagcaggcttcctatgcctatcgtgagacgggggctgactatcgctttgccctg
cctgatagcaccatgcaggccacggtgtcctaccgctatgaggcggacggtgccattgcc
gtcaccgcccattggccgggggatgccagcctgccgtcactgccgctgttcggcctgacg
attcccatgcccgcacgcttcgaccgcttccgctattatggacttggaccggaggaaaat
cacatcgaccgcgcccatggcgcacggcttggcatttacgagcgcgcggtggccgacaat
gtcacgccctacgtcatcccgcaggaatccggcaaccgaaccggcgtacgcttggccgat
ctgttcgaccctgacggcaacacattgcgcttcgaggcggtggacatgccattcgagctg
ggcgtttcgccttacacggctttccagctggaagccgcggcccggccctatgacctgccg
ccagccaaccgcaccattgtcacgctgatggcccggcagatgggcgtcggcggtgacgat
agctggggcgcgctgccgcatcctcaatacatgatcgagccgggcgagcctttgaccctc
accttccggatgagagtgatggggtga
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