Agrobacterium vitis VAR03-1: RvVAR031_41650
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Entry
RvVAR031_41650 CDS
T08810
Name
(GenBank) ABC transporter ATP-binding protein
KO
K02052
putative spermidine/putrescine transport system ATP-binding protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_41650
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avf02000
]
RvVAR031_41650
Transporters [BR:
avf02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
RvVAR031_41650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
TOBE_2
SMC_N
AAA_21
AAA_23
AAA_29
RsgA_GTPase
nSTAND1
Rad17
Mg_chelatase
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCH56515
LinkDB
All DBs
Position
2:complement(947365..948462)
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AA seq
365 aa
AA seq
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MVAPAPLSTQAAQPKQGAKLELVGLRRAFGAYKALDGIDLAIEPGEFIALLGPSGCGKST
ALNCIAGLLPLTGGEIRVGGQRIDQLEPEKRGFGMVFQSYALFPHMTVRRNVGFGLAMQG
IKGTEADRRIEAALELVRLGSQADKLPGQLSGGQQQRVAIARAIVIRPPVVLMDEPLSNL
DAKLRLEMRADIRAIHDQIGSTTIYVTHDQDEALSMADRIVVMSQGHIRQIGTPEDLYMR
PNHVDVADFMGFRTRIAGRITAVSGDEAQIEAAGATTVGTPRQPVQVGDAAVLSVRPEDM
IAVQDGSGIPVTVKSMEYRGRAYFGAAEASDGAEVHFRSDILLPRGTTTSVRPAEGRALI
FKGDA
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgcgccagcccctttatcgacgcaggctgcccagcccaaacagggggcaaagctt
gaacttgtcggccttcgccgcgcttttggcgcgtataaagcgcttgacggtattgatctc
gccattgagccgggcgaattcatcgcgctgctcggtccttccggctgcggaaaatccacg
gcgctgaactgtatcgccggacttttgccgctgacgggtggcgaaatccgggtcggtggc
cagcgcatcgatcaattggagccggaaaagcgcggcttcggcatggttttccagagctat
gccctgtttccgcacatgaccgtgcggcgcaatgtcggcttcggcctcgccatgcaaggc
atcaaaggcacggaagccgaccgtcgcatcgaagcagcccttgagttggtgcgactcggt
tcgcaggcggataaattgccgggacaactctccggcggccagcagcagcgtgtcgccatt
gcccgcgccatcgtcatccgcccgccggtggtgttgatggacgaaccgctttccaacctg
gatgccaagctgcggctggaaatgcgcgccgatatccgcgccattcacgaccagatcggc
tcgacgaccatctacgtcacccatgaccaagacgaggcgctgtcgatggccgatcggatc
gtggtgatgagccagggccatatccgccagatcggcacgccggaagatctttacatgcgc
ccgaaccatgtcgatgtcgccgatttcatgggctttcgcacccggattgccgggcgaatc
acagccgtatccggcgatgaggcccagatcgaagcggcgggcgcaaccactgtcggcacg
ccccgccaacctgttcaggtcggcgatgcggctgtgctgagcgtcaggccggaggatatg
atcgccgtccaggatggcagcggcattccggtgacggtcaaatccatggaatatcgcggc
agagcctattttggtgccgcagaagccagcgacggcgcagaggttcattttcgctcggat
atactgctgccacgcggcactaccaccagtgttcgtccggcagaaggccgcgccctgatc
tttaagggtgatgcatga
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