Agrobacterium vitis VAR03-1: RvVAR031_41940
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Entry
RvVAR031_41940 CDS
T08810
Symbol
rsgA
Name
(GenBank) putative ribosome biogenesis GTPase RsgA
KO
K06949
ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.-
3.1.3.100
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00730
Thiamine metabolism
avf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
RvVAR031_41940 (rsgA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
avf03009
]
RvVAR031_41940 (rsgA)
Enzymes [BR:
avf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.100 thiamine phosphate phosphatase
RvVAR031_41940 (rsgA)
Ribosome biogenesis [BR:
avf03009
]
Prokaryotic type
GTPases
RvVAR031_41940 (rsgA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RsgA_GTPase
MMR_HSR1
ABC_tran
FeoB_N
Septin
GTP_EFTU
AAA_29
AIG1
AAA_25
AAA_16
Dynamin_N
MeaB
AAA_22
NACHT
AAA_28
VapE-like_dom
AAA_33
Roc
ATP-synt_ab
AAA_5
AAA_24
nSTAND1
IIGP
Motif
Other DBs
NCBI-ProteinID:
BCH56544
LinkDB
All DBs
Position
2:complement(982444..983439)
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AA seq
331 aa
AA seq
DB search
MLATLGWSEFFADQIAPDETALTPWRIASVHRARVEAIHTGGNGDLGLPHHSNTADFAVG
DWVLAHPATGEFVRRLERKTVLQRRTEGRNGQQLAAANVDTLFIVTSCNADFNPARLERY
LVMANQSGANPVLVLTKADTVDDAQKFVDEAAGLQRDLPVVTVNARAPDAAAALAPWCGI
GQTVALVGSSGVGKSTLVNTLAGLETGQPQKTGDIREHDAKGRHTTTARSLHAISGGGWV
IDTPGIRTLYVSDVTDGLDTLFSEITDLAPQCRFRDCTHAHEPGCAVQAAIAKGELPPER
LERWRILLTESRKRTPVTTGPRGNKIPRKGK
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgcaacgctcggctggtcggagttttttgcagaccagatcgccccggatgaaaca
gccctgacgccctggcgtattgcctccgttcaccgcgcccgcgtcgaagcgatccatact
ggcggaaacggtgatctcggattgcctcaccacagcaataccgccgatttcgcggtggga
gactgggtgcttgcccatcctgcaaccggggaattcgtccgcaggctcgagcgcaagacc
gtcttgcagcggcgcacggaaggccgaaacggccaacagcttgccgctgccaatgtcgat
acgctgtttatcgtcacgtcctgcaatgccgatttcaatccggcccggctggaacgctat
cttgtcatggccaaccagtccggcgccaatccggtgctggttctgaccaaggccgatacg
gttgatgatgctcaaaaattcgtcgatgaggccgcaggcctgcaacgcgacctgcccgtg
gtcacggtcaatgcccgcgccccggatgccgcagcagcgcttgctccctggtgcggcata
ggccagacagtcgcccttgtcggctcgtcgggggttggaaaatcgacccttgtcaacact
ttagccggtttggagacgggccagccccagaaaaccggcgatatccgcgagcacgatgcc
aagggacgtcatacgacgacggcgcgatccctgcatgccatcagcggtggtggctgggtc
atcgacacgccgggaattcgcacgctctacgtcagcgatgtaacggatgggctcgataca
ttgttcagcgaaattaccgatcttgcgcctcaatgccggtttcgcgactgcacccatgcc
catgagcccggctgcgccgtgcaggcggccattgccaagggcgaactgccaccggaacgc
ctggagcgctggcgtatcctgctgacggaaagccgcaagagaacgccggtgacaaccgga
ccacgtggcaataaaatcccgcgaaaaggaaaataa
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