Agrobacterium vitis VAR03-1: RvVAR031_42560
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Entry
RvVAR031_42560 CDS
T08810
Name
(GenBank) ABC transporter substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_42560
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avf02000
]
RvVAR031_42560
Transporters [BR:
avf02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
RvVAR031_42560
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_11
SBP_bac_6
TAT_signal
Motif
Other DBs
NCBI-ProteinID:
BCH56606
LinkDB
All DBs
Position
2:complement(1070189..1071334)
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AA seq
381 aa
AA seq
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MNRRDFLLASCASAGLAAMPNFAFAAGKEINVYSGSDANIIDFWNNIIRPSFEKANSDLT
IKVIDAGDNNGLRAIGDRALAALKSNSDPQADLFEAFNPRLPTGAIDAGLWVAFSEKNVP
NFGRVNPMAIDLSQSLPYRGSQVLLAYDSTKLDPKDAPKTWDQLIGWIKANPGQFTYNRP
DKGGSGGNFVRRAIHEANGRDPSKFTVGNYTAEAAEKALPPSWKILNDLAPSLYEKGAYT
SGNSQSIQLLAQGVVTMVPVWSDQALQSIAQGVLPDTTRLVQLTDLALCGDFARLTVFSN
GANKDAALKLANVLLSEEIQSAIITELGGFPGVSWDYISKDLREKYADVIPASIPTFPSG
DWEMAVNDGWFRNVAPGLARG
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaacagacgcgactttctgctagcttcctgtgcaagcgccggcctggctgccatgccg
aattttgcctttgctgcgggcaaggaaatcaatgtctacagtggctccgatgccaatatc
atcgatttctggaataacatcatccgtccaagcttcgaaaaagccaatagcgacctgacg
atcaaggtgatcgatgccggtgacaataacggtttgcgggcgattggcgaccgcgccctc
gccgcactgaaatccaacagcgatccgcaggccgacctgtttgaagccttcaatccgcgc
ctgccaactggcgccatcgatgccggtctatgggtggcattctcggaaaagaatgtcccg
aatttcggccgcgtcaacccgatggccatcgatctgtcgcagtcgctgccctatcgcggc
tcgcaggttcttctggcctatgacagcaccaagcttgatccgaaagatgcaccgaagacc
tgggaccagctgattggctggatcaaggctaatcccggccagttcacctacaaccgcccc
gacaagggcggctccggtggaaatttcgtccgccgtgctatccacgaagccaatggccgc
gacccttcgaaatttaccgttggcaattacaccgcagaagcggcggaaaaagccttgccg
ccgagctggaagatcctcaacgatctggccccatcgctctatgaaaagggtgcctatacc
tccggtaactcacagtcgatccagctgcttgctcaaggcgtcgtcaccatggtgccggtc
tggtccgatcaagcccttcagtctattgcccagggcgtcctgccagacacgacacggctg
gtgcaattgaccgatctggcgctttgcggcgatttcgcccggctgaccgtattttccaac
ggtgccaacaaggatgccgccctgaagctcgccaatgtcctgctgtctgaagaaattcag
tcggcaatcatcaccgaacttggcggctttccgggtgtgtcctgggattatatttccaag
gacctgcgtgagaaatatgccgacgtcattcccgcgtcgatcccgacattcccaagcggc
gattgggaaatggcggtcaatgacggctggttccgcaatgtcgcaccaggcctggcgcgg
ggttga
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