Agrobacterium vitis VAR03-1: RvVAR031_42780
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Entry
RvVAR031_42780 CDS
T08810
Name
(GenBank) peptide ABC transporter substrate-binding protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_42780
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avf02000
]
RvVAR031_42780
Transporters [BR:
avf02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
RvVAR031_42780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
BCH56628
LinkDB
All DBs
Position
2:1108191..1109717
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AA seq
508 aa
AA seq
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MVHARFFKPGTLRRIAVMTLAATTVWFVGLGLAAAAQRTLTLGMNIEPTGLDPTVAAPVA
IGQVTWQNIFEGLVAIDRDGKIVPQLAKSWEISPDGLTYTFKLQEGVTFHDGEAFDSSVA
KFTLDRARGPDSTNGQKRFFTAIDSIETPDKATLVLKLKEPAGSLLYWLGWPASVMVAPK
SAADDKTNPIGTGPFKFVSWTKGDRVELAANPDYWNKQVKLGLDKVVFRFIPDAQAQAAA
LKSGGVDAFPEFSAPELMDSFKDDAKLATVVGNTELKVVAGMNNTRKPFNDKRVRQALMM
AIDRSTLVEGAWSGYGTVIGSHYTPNDPGYIDTTKVLPYNPEKAKALLTEAGYPNGFSFT
IKTPQMTYAPRSAEIMQAMLAEIGVTMTIEPTEFPGKWVSDVFKGTDYDMTIVAHAEPMD
IDIYARDPYYFNYQNPVFNETIKKIQATSDPAAQATLYGQAQQILAEDVPALYLFVMPKL
GVWNKKIKGLWENEPIPANVLTDVHWED
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggttcatgcacgctttttcaagccgggcactttgcgtcgcatcgcggtgatgacgctg
gcggcgacgacggtctggtttgtcgggctgggtcttgcggcggctgcccaaaggacgctg
acgctcggcatgaatatcgagccgaccgggcttgatccgacggtggcagcccctgtggca
atcggccaggtgacctggcagaatatttttgaggggctggttgccatcgaccgtgacggc
aagatcgtgccgcagctggcgaaaagctgggagatctcccccgacggcctcacctataca
ttcaagctccaggagggcgtgaccttccacgatggcgaggcgtttgattcctccgtggcg
aaattcacgctcgaccgggcgcgtggcccggactcgaccaatggccagaaacggtttttc
accgccatcgacagtattgagacgcccgacaaggcaacgctggtcttgaagctgaaggaa
ccggcgggttcgttgctctactggctggggtggcccgcttccgtgatggttgctccgaaa
agtgctgctgacgacaagaccaaccccatcggcactggcccgttcaaattcgtcagctgg
accaagggcgacagggtggagcttgccgccaatcctgattactggaacaagcaggtgaag
ctcggcctcgacaaggtagtgttccgtttcattcccgatgcccaggcccaggcggcggcc
ctgaaatcgggcggcgtcgatgcctttcccgagttcagcgcgccggaactgatggatagt
ttcaaggacgacgccaagcttgcgacggtggtcggtaatactgagttgaaagtcgtggcg
ggcatgaacaatacccgcaagccgttcaacgacaagcgcgtgcgccaggcgctgatgatg
gccatcgaccgctcgacactggtggaaggcgcctggtcgggctacggcactgtgattggc
agccattatacgccgaacgatccgggctatatcgatacgaccaaggtcctgccctataac
ccggaaaaagccaaggcgctgttgactgaggccggctacccgaacgggttcagctttacc
atcaagaccccgcaaatgacctatgcgccgcgcagcgctgaaatcatgcaggccatgctg
gccgaaatcggcgtgacgatgaccatagagcccaccgagtttcccggaaaatgggtgtcg
gacgtgttcaagggtacggattacgacatgaccatcgttgctcatgctgagcccatggac
atcgatatctatgcccgcgacccctattatttcaactatcaaaacccggtcttcaacgag
acgatcaagaaaatccaggccacatccgatccggcggcccaggctacgctttacggtcag
gcgcaacagattttggcggaggacgttcccgccctctatctgttcgtcatgccaaagctt
ggtgtgtggaacaagaaaatcaagggcttgtgggagaacgaaccgatccccgccaatgtt
ctgacggatgtgcattgggaggattga
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