Agrobacterium vitis VAR03-1: RvVAR031_pl00070
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Entry
RvVAR031_pl00070 CDS
T08810
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avf03032
]
RvVAR031_pl00070
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_pl00070
Enzymes [BR:
avf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RvVAR031_pl00070
DNA replication proteins [BR:
avf03032
]
Prokaryotic type
DNA Topoisomerases
RvVAR031_pl00070
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RvVAR031_pl00070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BCH56676
LinkDB
All DBs
Position
pRvVAR031a:8736..9872
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AA seq
378 aa
AA seq
DB search
MPIATCVGLIMEPAGRSIVISGMNQITTEIDRNATEAELTSGLVYVAGLETGITRKMGAR
GFLYYRPDGRRITQADEIARLNSLAIPPAYTDVVISTNPFSHLQAIGTDARGRRQYRYHK
DWHAERGKAKFERLADFASRLPDLRERVDIDLRSRGLNLDKALATVVWMLDNLYIRIGNA
AYAEANKSFGLTTLRSRHVRVEGASVKFRFKGKSGKEWNLAHSDRRIANVLRKLQELPGQ
HLFQYVCDQGGCRPISSHDVNAYIREMIGDDFSSRQFRTWGATCMAVEALASAEPATTKR
ELARQLNEAIDAVAAKLVNTRSVCRSSYIHPAVFEDFQTGTLRDVLKLKTTSERLLQWMD
EGEIQVLKWLKKQTISKG
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcgccacctgcgtcggcctgatcatggaacccgcaggccgttccatagttatt
tcgggaatgaaccagatcaccaccgaaatcgatagaaacgcgaccgaagccgagcttacg
tccgggctcgtttatgttgcaggattggagaccgggataacccggaagatgggtgccaga
ggcttcctctattaccggccagacgggcggcgaattacccaggctgatgagattgctcgt
ctaaattcgctggcaataccgcccgcctatacagatgtcgtcatctcgacgaatccgttc
tcacacctgcaggcaatcggcacggatgcgagagggcgtcggcaatatcgatatcataaa
gattggcacgccgaacgaggtaaagccaagttcgaacggttggccgatttcgcgtcccga
cttccagacctgcgcgagagggtcgacatcgatcttcgttcgcgtggccttaacctcgac
aaggcgttggcaaccgtcgtatggatgctcgataacctctatatcaggatcggaaacgct
gcctacgcagaggcgaacaagtcgttcggcctgaccacgttgcgcagtcgtcacgtgcgg
gtcgaaggcgccagcgtcaagtttcggttcaaaggcaaatccggcaaggaatggaacctt
gcccatagtgaccggcggatcgccaatgtcctgcgaaaactacaggaacttccagggcag
catctttttcaatacgtttgcgatcaaggcggatgcagaccgatctcctcgcatgatgtg
aatgcctatatccgagagatgataggtgacgattttagttcacgccagttcaggacgtgg
ggcgcaacgtgcatggcagtggaggcactggcttctgccgagcccgctacgacgaaacgc
gagctggcccgccaactcaatgaagcgattgacgcagtcgctgcgaagctggtcaataca
cgatctgtctgtcggtcttcctacatacatcccgccgtgttcgaagacttccaaacgggt
acgcttcgtgatgtccttaagttgaaaaccacgagtgaacgccttcttcaatggatggac
gaaggcgagatccaagtgctaaaatggctgaagaaacaaacgatatccaagggctag
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