Agrobacterium vitis VAR03-1: RvVAR031_pl03030
Help
Entry
RvVAR031_pl03030 CDS
T08810
Name
(GenBank) transcriptional regulator
KO
K05818
IclR family transcriptional regulator, mhp operon transcriptional activator
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
avf03000
]
RvVAR031_pl03030
Transcription factors [BR:
avf03000
]
Prokaryotic type
Helix-turn-helix
IclR family
RvVAR031_pl03030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_IclR
IclR_C
TrmB
MarR_2
HTH_20
HTH_24
MarR
HTH_23
HTH_Cmi2_C
HTH_5
DUF2250
HTH_Crp_2
Rrf2
Motif
Other DBs
NCBI-ProteinID:
BCH56972
LinkDB
All DBs
Position
pRvVAR031a:complement(341469..342368)
Genome browser
AA seq
299 aa
AA seq
DB search
MFSKKVKWEETMTYKSIRALERGIDVLQYLNTVKGAAPPEIAEHVNLPRPTVHRILETLS
ELNLVYRSQLGDEYRLSSGVQRLAGNRSSTRLNWIDEIALPALLELTSEIIWPSDIAVYH
KAAMVIQGTTHRISPMSCDVGMVGNRRSMLTSPLGRAYLSHCPDDELKSILCALKASSTS
EDQGARDCSFINEIIETGRRDGVSACNERPHPRCASLAAPIRFNGKVLACMNVVWRANML
TIEDAMGQIRDPLLATRDRIEIQLREHFLRPALGSTSFPETYTLRTGTRDRLPHSLALA
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgttttccaaaaaagtcaaatgggaggagaccatgacttataagagcatcagggcactg
gagcgcggtatagacgtgttgcagtaccttaatacggttaaaggagctgcaccgccggag
attgctgaacatgtcaatcttccacgtcctacagtccatcgaattcttgaaacactgagc
gagctcaacttggtctatcgcagccagcttggtgacgaatatcgtcttagctctggcgtg
cagcgactggcaggcaacaggtcctccacgcggctgaattggattgatgaaatcgccctg
ccagcactgcttgaactcacatcggagatcatttggccatcggacattgctgtttaccac
aaagctgcaatggttattcagggaaccacacatcgcatcagtcccatgtcgtgcgatgtc
ggaatggttggcaatcgccgatccatgctgacgagcccgctgggccgtgcctatctcagt
cactgcccggatgacgagctaaagtcgattctttgcgctcttaaagcgtcatcgacatct
gaggatcagggtgcgcgcgattgcagctttatcaacgagatcatcgaaacaggccgtcgt
gatggtgttagcgcctgcaacgaacgaccgcacccgcgatgcgccagtcttgctgcaccc
attcgctttaatgggaaggtacttgcctgtatgaacgttgtctggcgggccaatatgctc
acgattgaagacgcaatgggtcagatacgtgacccattgctcgcaacgcgtgaccggatc
gaaattcaactccgcgagcattttttacgaccggcgctgggctcgacaagcttccctgaa
acatacaccctgcggacgggaacgcgtgatcgcttgcctcacagtctagcccttgcttga
DBGET
integrated database retrieval system
