Agrobacterium vitis VAR03-1: RvVAR031_pl03340
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Entry
RvVAR031_pl03340 CDS
T08810
Symbol
benD
Name
(GenBank) 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
KO
K05783
dihydroxycyclohexadiene carboxylate dehydrogenase [EC:
1.3.1.25
1.3.1.-]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00362
Benzoate degradation
avf00364
Fluorobenzoate degradation
avf00622
Xylene degradation
avf01100
Metabolic pathways
avf01120
Microbial metabolism in diverse environments
avf01220
Degradation of aromatic compounds
Module
avf_M00551
Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RvVAR031_pl03340 (benD)
00364 Fluorobenzoate degradation
RvVAR031_pl03340 (benD)
00622 Xylene degradation
RvVAR031_pl03340 (benD)
Enzymes [BR:
avf01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.1 With NAD+ or NADP+ as acceptor
1.3.1.25 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
RvVAR031_pl03340 (benD)
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Motif
Pfam:
adh_short
adh_short_C2
Motif
Other DBs
NCBI-ProteinID:
BCH57003
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All DBs
Position
pRvVAR031a:374576..375364
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AA seq
262 aa
AA seq
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MSTVIFPGRFGGKVLVVTGAAQGIGRAVAIRAAQEGGRVVFVDRADFIADVAADVEGAET
AAIQVDLETYEGASTAMDFAAEKFGGIDILINNVGGAIRMRPYHEFEPQQIDAEIRRSLM
PTLYGCHAVLPHLFARGGGTIVNVSSNATRGIHRVPYSAAKGGVNAISQSLAMEVAGHNI
RVVATAPGGTEAPPRIVPRNSAGDTEAEKGWMADVVGQVKQSSFMKRYGTIEEQAAPILF
LASDEASYITGTVLPVAGGDLG
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagtaatcttccccggtcgcttcggtggcaaagtcctggtggtgacgggtgct
gcccagggcattggccgcgccgtcgccattcgggcggcgcaagagggcgggcgcgtcgtg
tttgtcgatcgcgcggatttcatcgcagatgttgctgctgacgttgagggtgcggagacg
gcggcaattcaggttgatctggagacctatgagggtgcatccactgctatggacttcgcg
gccgaaaaatttggcggcattgatattctgatcaacaatgttggcggtgccatccgtatg
cggccttatcatgaattcgagccgcaacagatcgatgccgaaatccgccgctccttgatg
ccaacactctacggctgccatgcggttttgccgcatctctttgcgcgtggcgggggcacc
attgtcaatgtgtcatccaatgccacacgcggcattcaccgtgtgccgtattcagcggcc
aagggcggcgtcaatgccatcagccaatcgctggctatggaagtggccggacacaatatt
cgtgtcgtggccacagcacccggcggcacagaagcgccgccccgcattgttccgcgcaac
agcgccggtgatacggaggcggaaaagggctggatggcggatgttgtcgggcaggtcaaa
caatccagcttcatgaaacggtacggcacaattgaagagcaggccgcacccattctgttt
ttggcctcggacgaggcaagctacatcaccggcaccgtgctgcctgtcgccgggggcgat
ttgggctga
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