Agrobacterium vitis VAR03-1: RvVAR031_pl04210
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Entry
RvVAR031_pl04210 CDS
T08810
Name
(GenBank) spermidine/putrescine ABC transporter permease
KO
K02054
putative spermidine/putrescine transport system permease protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_pl04210
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avf02000
]
RvVAR031_pl04210
Transporters [BR:
avf02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
RvVAR031_pl04210
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
BPD_transp_1
Motif
Other DBs
NCBI-ProteinID:
BCH57090
LinkDB
All DBs
Position
pRvVAR031a:457674..458543
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AA seq
289 aa
AA seq
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MSLSSAKRVSLVQIAPMALVLVCFVILPLAMILVVSFMDYGFAEVIPEFIWENYLDIFTS
ELTLKLYLQTFKFLAIVWAITLFLGFTIAYYLMFHVRSPIVRALCIAACAIPFWTSGPIR
MVSWVPLLGREGLVNQVLLHLHIIEQPLSWLLYSEFSVIVVYVNVLTLAMLGPIANSMAK
IDKNLLHAARDQGASEGQIIRLVIIPLIKPGIAIGSIFIVTAVMGDFFIVKQMGGGQINT
AVGAIATELNAFQYPPAAAKSVVMLVIVLGFVASLLRVVDIRKELANQE
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtcactctcctcggcaaagcgggtatcgcttgtgcaaatcgcgcccatggcgctggtt
ctggtgtgtttcgtgatcctgccgctggcgatgatccttgttgtcagtttcatggattac
ggttttgccgaggtgatcccggaatttatctgggagaattatctcgatatcttcacctcg
gaactgacgctcaagctctatctccagaccttcaaattcctggcgattgtctgggccatc
acgctgtttctcggctttaccatcgcctattacctgatgtttcatgttcgcagccccatc
gtgcgggcgctgtgcattgcggcctgcgccataccgttctggacatcgggtccaatccgc
atggtgtcctgggtaccgcttttggggcgtgaaggactggtcaatcaggtcttgctgcat
ctgcatatcatcgagcagccgctctcctggctgctctattctgaattttccgtcatcgtc
gtctacgtcaacgtgctgacgttggccatgttggggccgatcgccaattccatggccaag
attgataaaaatctcctgcatgccgctcgtgatcagggagcaagcgaaggacagatcatt
cgtctggtgattattccgctgatcaaacctggcatcgccataggttcaatctttattgtg
acagccgtgatgggtgatttcttcatcgtcaagcaaatgggcggtggtcagatcaacacg
gcggtcggggccatagccaccgagctgaacgccttccaatatccaccggctgcggcaaaa
tcggtggtgatgctggtcattgtgctaggctttgtcgcctctttgctgcgcgttgtcgat
atccgtaaagaactggccaatcaggagtga
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