Agrobacterium vitis VAR03-1: RvVAR031_pl05090
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Entry
RvVAR031_pl05090 CDS
T08810
Name
(GenBank) peptide ABC transporter substrate-binding protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_pl05090
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avf02000
]
RvVAR031_pl05090
Transporters [BR:
avf02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
RvVAR031_pl05090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Arylsulfotran_N
Motif
Other DBs
NCBI-ProteinID:
BCH57178
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Position
pRvVAR031a:complement(598526..600151)
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AA seq
541 aa
AA seq
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MANILKYYEDFAFGSVRFVSVTLALLGASAAIYGINTPSAFAEEQPIKGGEMTIINGSDI
KSWDPAIIGGTYPGGPMDMLDAIYGFLVYVDVDGKVQGGMAKSLTSTDAKVWTLTLRDGV
KFTDGTPYDAEAVKFNWERQAAPDTLSPSQGFVSSWIGGVKIVDPLTIEITLPKPDRNFG
SSLAQLAPFIASPQALKAAKTKTDIKPVGAGAFVLDSWNQGVSMSMKRNSQYWDQPRPYL
DTLKFSIIPETNSRIATVVQGGATMMAGYPYQFGSNAKAAGVATHEIPIPGLYRAYFNQK
SGSFTDHRAREAFYEAINPSKLMQAYTQVSGYDIPTNYFTKSSPFYDATYKLPTYNPEHA
QELFDQLAKDGKPFNIKLVTYSNSDLKRLASYLQQALSAYDNVTVNLQLVDQAMLSPTCK
GQMNFDFCVDGGVLVANGAEPIISNLLSSTGNDNWGKYNSMDMDKELAEANATMDPAAVK
AAYAKVQKRVATDLPLYIFGAETRFLLLRDTTGGIVPSNGGILQKQYLYVCNDACVSKAS
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggctaatatattgaaatattacgaggatttcgcattcggatctgtgcgctttgtcagt
gtcacgctggccttgcttggggcaagtgccgcaatttacggcatcaataccccatcagcc
ttcgctgaagaacagcccatcaagggcggtgaaatgaccattatcaatggctcggacatc
aagagctgggaccccgccattattggcggcacctatccaggcggccctatggatatgctc
gatgctatctatggctttcttgtctacgtggacgtggatggcaaggtacagggcggcatg
gccaagagcctgaccagcacggatgccaaggtctggacactgacattgcgcgatggcgtg
aagtttaccgatggcactccctatgatgccgaggcggtgaaattcaactgggaacgtcag
gccgctcccgacaccctgtctccctcgcaaggctttgtttcctcgtggattggcggcgtg
aagattgtcgatcctttgacgattgagatcacactgccgaagccggatcgcaattttggc
tcatcgctggcacagctcgcccccttcattgcctctccacaagcattgaaagccgctaag
accaaaaccgatatcaagccggttggggccggtgcctttgtgctggatagctggaaccag
ggcgtttcgatgagcatgaagcgcaattcgcaatattgggatcagccacgtccctatctc
gacacgctgaaattctccattattcccgaaaccaacagccgcatcgccaccgtggtgcag
ggtggtgccacaatgatggcgggctatccctatcagttcggatcaaacgccaaggcagca
ggcgttgccacccatgaaatcccgattcccggtctctatcgcgcttatttcaaccaaaag
agcggctccttcaccgatcatcgggcgcgcgaagctttctatgaagcgatcaatccatcg
aagctgatgcaggcttatacgcaggtcagtggttacgacattccgactaattatttcacc
aagtcgtcgccattctatgatgcgacctataaactcccgacctacaatcccgagcatgcg
caggaattgttcgaccagctcgccaaggatggaaaaccattcaacatcaagctggtgacc
tattccaactcggatttgaaacgtctggcctcctacctgcaacaggctttgagtgcttat
gacaacgtgacggtcaatcttcaactggttgatcaggccatgctcagcccaacctgcaag
gggcagatgaatttcgacttctgcgtcgatggcggcgtgctggtggccaatggtgcagag
ccgatcatttccaaccttctcagctcaaccggcaatgacaattggggcaaatacaacagc
atggacatggataaagagctggcagaagccaatgccaccatggacccggctgcggtgaag
gcagcctatgccaaagtgcaaaagcgagttgcgacagaccttccgctttacattttcggt
gccgagacccgcttcctgctgctgcgcgacaccacgggcggcatcgtgccctccaatggc
ggcatcttgcagaaacaatatctctacgtctgcaacgacgcttgcgtgtcaaaagcctcg
aagtaa
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