Anaerococcus vaginalis: I6H45_01900
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Entry
I6H45_01900 CDS
T07162
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
avg
Anaerococcus vaginalis
Pathway
avg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6H45_01900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avg03021
]
I6H45_01900 (rpoC)
03400 DNA repair and recombination proteins [BR:
avg03400
]
I6H45_01900 (rpoC)
Enzymes [BR:
avg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6H45_01900 (rpoC)
Transcription machinery [BR:
avg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6H45_01900 (rpoC)
DNA repair and recombination proteins [BR:
avg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6H45_01900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
HAT1_C
Motif
Other DBs
NCBI-ProteinID:
QQB62249
UniProt:
A0A7T4F1Y5
LinkDB
All DBs
Position
362480..366040
Genome browser
AA seq
1186 aa
AA seq
DB search
MSELQEFGAMRMKIASPEKIRSWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDYEC
SCGKYKRIRYKGVVCEKCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSKMGLLLDM
SPRVLEKILYFASYVVINPGETEYYEKQELSESEYSEALDNYPDDTEFQAEMGAEAVKKL
LANMDLKKEYESLMKELEDAKGQKKVRISRRLEVVDAFLTSGNKPEWMILDVLPVMPPEL
RPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDIGAPEIIVRNEKRMLQEAVDALIDN
GRRGRAVTGASNRNMKSLSDLLKGKSGRFRQNLLGKRVDYSGRSVIVVGPNLKFNQCGLP
QEMALELFKPFIMNKVVEKDLAHNLKSAKKMVEKKDPRVYEILEEVIKDHPVLLNRAPTL
HRLGIQAFEPVLVEGKAMKLHPLACPAFNADFDGDQMAIHLPLSNEAQIEARLLMMSTNN
ILGLKDGKAITTPSQDMVLGAYYLTTIKEGAKGEGMIFENISEMKKALLNHDVTLQTKVG
VRIKKDEKDPGKIVNSSVGRFIYNEGIPQDLGYVNRKEDPYSLEVDQVTSSGVLKEIVDR
CFRKHGNIKTASVLDYIKSTGYKFSTLSGLTVSMSDVTIPHQKWDIVSKADEEVDKYEKL
YRRGFITDNERYEKVIDIWREATDEVTAALLDELKSDNNIKIFADSGARGSTNQIRQLGG
MRGLMSRADGKIIEIPIKANFREGLSVQEYFISTHGSRKGLTDTALRTADSGYLTRRMVD
ISQDVIVTEDDCGTDGYVVAREFKDGNELIENLFTRIVGRTSFEDIYDNDGELIVSKNQI
IDEDKADNIVANGIKEVKLRSVLECKSKHGVCEKCYGRNLATGKKVNIGEAVGIIAAQSI
GEPGTQLTMRTFHSGGIAGVGITQGLPRVEELFEARKPKGLAFIAENSGTVSLIQNEKKT
DVEILSEDGYSKKYNIPFGARLLVSEGDVVEKGQQLTEGSLDPHDVLKVLGKVGVQDYIT
KEVQKVYRLQGVEIDDRHIEVITKQMLKKVKIEDAGDTEFLPGSLQEIREVRIANEQMEE
EGKKPCKYSQQLLGITKASLATESWLSAASFQETTRVLTDASIKGKVDDLKGLKENIIIG
KLIPAGTGMKVYNDFDINYENKDLEDAQIQMNIEEVENREKEALNE
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagaattacaagaatttggtgctatgagaatgaaaatagcatctcctgaaaaaatc
agatcatggtcccatggcgaagtaaaaaaaccagaaactatcaattacagaacacttaaa
cctgaaaaagatggtttattctgtgagaaaatttttggaccaaccaaggattatgaatgc
tcttgtggtaaatacaagagaattagatataagggtgttgtttgcgaaaaatgtggtgtt
gaagtaacaaaatctaaagtaagacgtgaaagaatgggacatattgaacttgcagctcct
gtaagtcatatatggtatttcaaaggaatcccttcaaaaatgggtcttctattagatatg
agtccaagagttttggaaaaaatattatatttcgcatcctatgtagtaataaatcctgga
gaaactgaatattacgaaaaacaagaattatctgaaagcgaatattcagaggctctagat
aattatccagatgatacagaatttcaagctgaaatgggagcagaagctgttaaaaaactt
cttgctaacatggatcttaaaaaagaatatgaatctttaatgaaagaacttgaagatgca
aaaggacaaaagaaagtaagaatttctagaagacttgaagtagtcgatgcatttttaaca
agtggcaataaaccagaatggatgatacttgatgttcttccagttatgccaccagaactt
agaccaatggttcaacttgaaggtggaagatttgcaacaagtgatttaaatgatttatat
agaagagttataaatagaaacaacagattaaaaagacttcttgatattggagctccagaa
atcattgtaagaaatgaaaagagaatgctccaagaagctgtcgacgctttaatagataat
ggtagacgtggacgtgctgtaacaggtgcatcaaatagaaatatgaaatctctatcagat
ttattaaaaggtaaaagtggtagatttagacaaaacttacttggaaaaagagtagattat
tcaggacgttctgtaatagttgtaggtccaaatcttaaatttaaccaatgtggtttgcca
caagagatggctctagaattattcaaaccttttataatgaataaggttgtggaaaaagac
cttgctcataatttaaaatctgcaaaaaaaatggttgagaaaaaagatccaagagtatat
gaaatacttgaagaagtaataaaagaccatccagttttattaaaccgtgcccctacactt
cacagacttggtatccaagcttttgaaccagttttggttgaaggaaaggcaatgaaactt
cacccacttgcttgtcctgcttttaatgcggactttgatggggaccaaatggcaatccat
ttgcctttatcaaatgaagcccaaattgaagcaagacttttgatgatgtcaacaaacaat
attcttggtctaaaagatggtaaggcaataacaactccatctcaagatatggtacttggt
gcatattatctaacaactatcaaagaaggtgcaaagggcgaaggaatgatttttgaaaat
atttcagaaatgaaaaaagctcttttaaatcatgatgttacccttcaaacaaaagttgga
gtaagaattaaaaaagatgaaaaagatcctggaaaaattgtaaattcttcagttggtaga
tttatctacaatgaaggaattccacaagatttaggatatgtaaatagaaaagaagatcca
tattctctagaagttgatcaagttacatcatctggtgtattaaaagaaattgttgatcgc
tgctttagaaaacatggaaatattaaaacagcttcagttctagattatattaaatcaaca
ggatataagttctcaactctttcaggactaacagtttctatgtcagatgttacaattcca
catcaaaaatgggatatagtttcaaaagctgatgaagaagttgataagtatgaaaaactt
tatagacgtggatttataactgataacgaaagatatgaaaaagttattgatatttggaga
gaagcaactgatgaagtaacagcagctcttcttgatgaattaaaatctgacaataatatt
aaaatatttgcagattctggagcccgtggttctacaaaccaaattaggcaattaggcgga
atgcgtggacttatgtcaagagccgatggaaaaatcatagaaattcctataaaggctaac
ttccgtgaaggactttcagtacaagaatactttatttcaacacacggttctcgtaaggga
cttacagatacagctttaagaactgccgattcaggatatttgacaagaagaatggtagat
atttctcaagatgttatcgtaacagaagatgattgtggtacagatggatatgtagttgct
cgtgaatttaaagatggcaacgaattaatcgaaaatttatttacaagaattgtaggacgt
acatcatttgaagatatttatgataatgatggggaacttatagttagtaaaaatcaaatt
attgacgaagataaggccgacaacattgtagctaatggaattaaagaagttaaacttcgt
tcagttctagaatgtaaatctaaacatggcgtttgtgaaaaatgttatggtagaaacctt
gctacaggcaagaaagtaaatattggagaggctgtaggaattatagctgctcaatcaatc
ggagagccaggtactcagcttacaatgagaactttccactcaggaggaatcgcaggagta
ggaattactcaaggtcttccaagggttgaggagttatttgaagcaagaaaaccaaaagga
cttgcttttattgcagaaaactctggaacagtttcattaattcaaaatgaaaagaaaact
gatgttgaaattttatcagaagatggatattctaaaaaatataatattccatttggagca
agacttttagtatcagaaggagatgtggttgaaaaaggacaacaacttacagaaggttcc
cttgatccacacgatgtattaaaagttttaggaaaagttggagttcaagattatataacc
aaagaagttcaaaaagtttacagacttcaaggtgtagaaattgacgatagacatatagaa
gttattacaaagcaaatgcttaaaaaagtaaaaatagaagatgctggagatacagaattt
ttaccaggttcattgcaagaaattagagaagtaagaattgcaaatgaacaaatggaagaa
gaaggcaaaaagccatgtaaatattctcaacaacttctaggaattacaaaagcatcactt
gctacagaatcttggttatcagcagcatctttccaagaaacaacaagagttcttacagat
gcatcaataaaaggaaaagttgatgatttaaaaggactaaaagaaaatataatcatagga
aaactaataccagcaggtacaggaatgaaagtctacaatgactttgatattaactatgaa
aataaagaccttgaagatgcacaaatccaaatgaatatagaagaagtagaaaatagagaa
aaagaagcattaaatgaataa
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