Anaerococcus vaginalis: I6H45_05160
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Entry
I6H45_05160 CDS
T07162
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
avg
Anaerococcus vaginalis
Pathway
avg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6H45_05160 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avg03019
]
I6H45_05160 (rnr)
03016 Transfer RNA biogenesis [BR:
avg03016
]
I6H45_05160 (rnr)
Enzymes [BR:
avg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I6H45_05160 (rnr)
Messenger RNA biogenesis [BR:
avg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6H45_05160 (rnr)
Transfer RNA biogenesis [BR:
avg03016
]
Prokaryotic type
tRNA degradation factors
I6H45_05160 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_Dis3
OB_RNR_1st
GMT-wHTH
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QQB61214
UniProt:
A0A7T4EZZ3
LinkDB
All DBs
Position
complement(1061247..1063367)
Genome browser
AA seq
706 aa
AA seq
DB search
MNFKDLIINIVNDKNYKPMTIDEMLRYLDCDKYIKKDVKKIIKKLAKENEIKISSKNKIH
PLSNDDKSLMGEISLAQGGYGFFISDNNEYMDVFISQNNLNSANDKDRVKIEIIKEKEYG
KNAEGKVVEILQRNTSQIVGLYKKNKGFGFVISDKDNLSSDIYIDEKFSKKAKNNDKVVC
EIIKYPKNGSPEGRIVEVLGNKNDFNVDVLSIIRSYGLKDNFSKKTKKEAIFIEKEVDIS
KQNDRKDLRDLFTVTIDGRDSKDFDDAISIEKDEEDFILYVHIADVSHYVKENSEIDKEA
YQRGNSTYLYNIVLPMLPEELSNGICSLNPNENRLALSLKMRINKLGKVVDYKIYKSIIK
SNYRLVYDDVNDYLDNKEKVYDDEILIEKLELFDNLYKILKNKREKRGAIDFNFTESQID
VNEKGDVLNISIFERGSANKMIEEFMLVSNETIASLFAYMDFPSLYRIHEKPKDEKVESF
KNILNTLGYNIKGKELHPKDFQEILKEVSGKDDESLVNMLMLRTMRKAKYANYRDIHFGL
ATKYYTHFTAPIRRYPDLIVHRLVKDFVDNKFENISQSSLEKQLAKNSEHLSITERNSEE
CERDVEDLYKCKYMKKYIGEKFQGIISTITDFGIFIELENTVEGCFMYKFSDDHFEYIEQ
KLSCVNRDNNKRYKIGQKVLIEVKNVDLEKRNIDFDLLEEEFENFS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaagatttaattataaatatagtaaacgataaaaattacaagccaatgact
attgatgagatgttaagatatttggattgtgataagtatataaaaaaagatgtaaaaaaa
attattaaaaaacttgctaaagaaaatgaaatcaaaataagctcaaaaaataaaattcat
ccattaagtaatgatgataaatcacttatgggagaaatttcactagctcaaggtggatat
ggattttttatttctgataataatgaatatatggatgtttttatttctcaaaataattta
aattcagcaaatgacaaagatagggttaaaattgaaattataaaagaaaaagaatatggg
aaaaatgctgaaggaaaagtagtagaaatccttcaaagaaatacaagtcaaattgttgga
ctttataaaaaaaataagggctttggattcgtaataagcgataaggataacctatcttct
gatatttatattgatgaaaaattttcaaaaaaagcaaaaaataacgataaagttgtctgt
gaaattataaaatatccaaaaaatggctctccagaaggaagaattgtagaagttttaggc
aataaaaatgattttaatgttgatgttttatcaataataagatcctatggactaaaagat
aatttttctaaaaaaacaaaaaaagaagctatttttattgaaaaagaagtagatatttca
aaacaaaatgatagaaaagatttgagagatttatttacagttacaattgatggtagggat
tctaaagattttgatgatgcaatatctatagaaaaagatgaagaagattttattttatat
gttcatattgcagatgtaagccattatgtaaaagaaaatagtgaaattgataaagaagct
tatcaaagaggaaattcaacttatttatacaatatagttttgcctatgctaccagaggaa
ttatctaatggaatatgttctttaaatccaaatgaaaatagacttgctttaagtttaaaa
atgagaattaataaattaggtaaagttgttgattataaaatatataagtctataatcaaa
tctaactataggttagtctacgatgatgtaaatgattatttggataataaagaaaaagtt
tatgatgatgaaattttgatagaaaaattagaattatttgacaacttatacaaaatttta
aaaaataaaagagaaaaaagaggagctatagattttaattttacggaaagccaaattgat
gtaaatgaaaaaggagatgttttaaatatttctatttttgaaagaggttctgcaaataaa
atgatagaggaatttatgttagtttcaaatgaaactatagctagtttatttgcttacatg
gattttccatcattatatagaattcatgaaaagccaaaagatgaaaaggtagaatctttc
aaaaatattttaaacaccctaggctataatattaagggaaaagaacttcatccaaaagat
ttccaagaaattttaaaagaagtttcaggaaaagatgatgaaagtcttgtaaatatgtta
atgcttaggacaatgagaaaagcaaaatatgcaaattatagggatattcattttggttta
gcaacaaaatattatacacattttacagctcctataagaaggtatcctgatttaatagtt
cataggcttgtaaaagattttgttgataataaatttgaaaatataagccaatcatcatta
gaaaaacaattagcaaaaaattcagaacacttatcaattacagaaagaaatagtgaagaa
tgtgaaagagatgtagaagatttatataagtgtaaatatatgaaaaaatatattggagag
aaatttcaaggaattatttcaacaattacagattttgggatttttattgaacttgaaaat
acggttgaaggatgttttatgtataaattttctgacgatcattttgaatatattgaacaa
aagctatcttgtgtaaatagagataataataaaagatataaaattggacaaaaagttttg
attgaagttaaaaatgtagatcttgaaaaaagaaatatagatttcgatttgttggaggaa
gaatttgaaaattttagctaa
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