Anaerococcus vaginalis: I6H45_05580
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Entry
I6H45_05580 CDS
T07162
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
avg
Anaerococcus vaginalis
Brite
KEGG Orthology (KO) [BR:
avg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I6H45_05580 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avg03021
]
I6H45_05580 (rpoD)
Transcription machinery [BR:
avg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I6H45_05580 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CM_2
Beta-prop_SPT8
Motif
Other DBs
NCBI-ProteinID:
QQB61294
UniProt:
A0A7T4EZW3
LinkDB
All DBs
Position
complement(1143580..1145424)
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AA seq
614 aa
AA seq
DB search
MTSDNEKMLEDDLLREIIDEFKSISESQDGVVTYKQVYTFETFKEMEDESKKYVIGQIIS
NGIEIVEEQRTVLDEDEDDEEIREDLDNDDDEDFSDEKLEDHMKKVSNKQKLEKKFMQDE
AITGIKLDDPVKMYLKEIGKVKLLDAHEEIFLAKKMELGDIAFRSKSGKKLTKQNKVKLA
LDIFYGDLSLTILGANQSILENKELDDETKTNLESLIEIGNQFENMLNQELTDEQLEAIK
SKILICNIAQKSIADKELSEKEANILCDLFDNFGKLVATKESDDIVSLIYLAFSDLYKKG
AENEILKTNDRLIINDLINFSNKARQVYEYKPLSESSIKDLERFTKTKNLCKKIFEDQGF
DADDVKRLNRAIFDANRAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVD
KYDYNRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRD
PSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAANY
SMLRDQLNDVLSCLGAREKRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKALRK
LKSPNKSELLKDFL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgactagtgataacgaaaagatgctagaagatgatcttctaagggaaataatagatgaa
tttaaatctattagtgaatctcaagatggggttgtaacttacaaacaagtttacactttt
gagacctttaaagaaatggaagatgaaagcaaaaaatatgttataggccaaattatatcc
aatggaatagagattgttgaagaacaaagaactgttttggacgaagatgaagatgacgaa
gaaatcagagaagatcttgataatgatgacgatgaagatttttcagatgaaaaacttgaa
gatcacatgaaaaaagtttctaataagcaaaagttagaaaaaaagtttatgcaagatgaa
gctatcactggtataaagttggatgaccctgtaaaaatgtatttaaaagaaattggaaaa
gttaagctattagatgctcacgaagaaatatttttggcgaaaaaaatggagctaggagat
attgctttcaggagtaaaagtggcaaaaaacttaccaaacaaaataaagtaaaacttgct
ttagatatattttatggagatctttcattaactatacttggtgcaaatcaatcaatttta
gaaaataaagaattagatgatgaaacaaaaacaaatcttgagtcattgattgaaattgga
aatcagtttgaaaatatgttaaaccaagaattaacagatgagcaattggaagccataaaa
tctaaaatactaatttgcaatattgcacaaaaatctatagcagacaaagaattaagcgaa
aaagaagcaaatattttgtgtgatttatttgataattttggaaaattagttgcaacaaaa
gaatctgacgatatagtttcactaatttatttagctttttcagacctttacaaaaaggga
gctgaaaatgaaattttaaaaaccaatgataggctgataattaacgatttaataaatttt
tcaaacaaagccaggcaagtttatgaatataagccgctttcagaatcaagtataaaagat
ttggaaagatttacaaaaaccaaaaatctgtgcaagaaaatttttgaagatcaaggattt
gatgcagacgatgtaaaaagattgaatagggcaatatttgatgcaaatagggcaaaacaa
aaattagcagagacaaatttaaggcttgttgtatcaattgcaaaaaaatatgtaggtcgt
ggaatgagctttttggatttgattcaagaaggaaatatgggacttatgaaagcagttgat
aagtatgattacaacagaggatttaaattttccacttatgcaacttggtggataagacaa
gctataactcgtgctattgccgaccaagctagaacaattagaattcctgttcacatggtt
gaaacaataaataaattagttagaattcaaagacaattagttcaagatttaggtcgtgat
ccatcaaacgaagaaattgctgagcaaatgggaattgaagttgaaaaagttcaagagata
agaaaaattgcccaagaacctgttagtttggaaacgccaataggcgaagaagaagacagc
catttgggagattttatagaagatgatacagctataaatcctgatgatgcagcaaattat
tcaatgcttagagatcaactaaatgatgtcttatcttgtcttggagcaagagaaaaaaga
gttttacaattaagatttggacttatagatggaactccaagaacattagaagaagttggc
aaagaatttgatgttacacgcgagagaattagacaaatagaagcaaaggcgctaagaaaa
ttaaaatcgcctaataagagtgaattattgaaagactttttataa
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