Achromobacter veterisilvae: WHX56_07970
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Entry
WHX56_07970 CDS
T10582
Name
(GenBank) ribonuclease catalytic domain-containing protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
avh Achromobacter veterisilvae
Brite
KEGG Orthology (KO) [BR:
avh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avh03016
]
WHX56_07970
Enzymes [BR:
avh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WHX56_07970
Transfer RNA biogenesis [BR:
avh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
WHX56_07970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF7691
RNase_P-MRP_p29
Motif
Other DBs
NCBI-ProteinID:
WXR75433
LinkDB
All DBs
Position
complement(1719783..1721687)
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AA seq
634 aa
AA seq
DB search
MYVFYEDDGSFKAGNILSETDASLQVESESGKRSKIKRANTLFTFAAPEPAALMGQAADT
AEALDLQFLWECAPQEEFDAPALAADYFGHAPTPVEQAALLMRLHGAPAYFHRRGKGRYR
PAPPDILAAALAALEKKQRQAEQQQEWVDEMAAGRLPEPIAQAAESLLIRPDKNSQQWKA
LDAACAKLGKSPDRLLLELGAWPHALALHKRRFLATNFPRGLAFPALELPPIDRELPLSD
AEIYSVDDVTTTEIDDALSVTPLPDGRLRVGVHVAAPGLSVTRDSEFDKLARARLSTVYM
PGDKIPMQPDNVIQAFSLDAGREVPVLSLYVVADPETGEVIESETRLERIVVRENLRHNM
LDAQVTEASLSDPSAELPYGHWLRPLWKLAQALSAQRENVRGKPENNSRVEYSFYLDGDP
DDPDTPVRLVPRQRNAPLDRMVAEYMILANNLWGGLLHQHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHGVSARLVAPFKPRDADLFAIIGAF
DAQYAAWAEFQSAMERYWCLRWLKQHNVTRTVAHVLREDLVRFANAPLVTRVGGMPELER
GTAVELDILGMDELSLELDCRYVGEIRPAVGGEG
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgttttacgaagacgacggcagcttcaaggccggcaatatcctgtcggagacc
gacgccagcctgcaggtggagtcggagtccggcaagcgcagcaagatcaagcgcgccaac
acgctattcaccttcgctgcgcccgagccggccgcgctgatgggccaggcggccgacacc
gccgaggccctggacctgcaattcctgtgggaatgcgcgccgcaggaggaattcgacgcg
cccgccctggccgccgactacttcggccacgcgcccactccggtcgagcaggccgccctg
ctgatgcgcctgcacggcgcgccggcgtacttccaccgccgcggcaagggccgctaccgc
ccggccccgcccgacatcctcgccgccgcgctggccgcgctggagaaaaaacagcgccag
gccgagcagcagcaggaatgggtggacgagatggccgccggacggctgcccgagccgatc
gcccaggccgcggagtccctcttgatccgtccggacaagaattcgcagcaatggaaggcg
ctggacgccgcctgcgccaagctgggcaagagccccgaccggctgctgctggaactgggc
gcctggccgcacgcgctggcgctgcacaagcgccgcttcctggcgacgaacttcccgcgc
gggctggctttccccgccctggaactgccccccatcgaccgcgaactgccgctctcggac
gccgagatctattcggtggacgacgtcaccaccaccgagatcgacgacgcgctgtccgtc
acccccctgccggacggccgtttgcgcgtcggcgtgcacgtggcggccccgggcctgagc
gtgacgcgcgacagcgaattcgacaaactggcgcgggcgcgcctgtccaccgtctacatg
ccgggcgacaagatcccgatgcagccggacaacgtcatccaggcgttctcgctggacgcc
ggccgcgaagtgccggtgctgtcgctgtacgtcgtggccgatccggaaaccggcgaggtc
atcgaatcggaaacgcgcctggagcgcatcgtggtgcgcgaaaacctgcgccacaacatg
ctggacgcccaggtcaccgaagccagcctgtccgacccctcggccgagctgccctacggc
cactggctgcgcccgctctggaagctggcgcaggctctgtccgcccagcgcgagaacgtg
cgcggcaagcccgagaacaattcccgcgtggagtacagcttctacctggacggcgacccc
gacgatcccgacacgccggtgcgcctggttccgcgccagcgcaacgcgccgctggaccgc
atggtggccgagtacatgatcctggcgaacaacctgtggggcggcctgctgcaccagcac
ggcgtgccgggcatctaccgttcgcagcaggccggccgcgtgcgcatgagcacgcaggcg
ctgccgcacgaagccatcggcgtgcctcagtatgcctggagcacgtcgccgctgcgccgc
tatgtggacctggtcaatcagtggcagttgatcgccgcggtcgaacacggtgtctccgcg
cgcctggtggcccccttcaagccgcgcgacgcggacctgttcgccatcatcggcgccttc
gacgcgcagtacgccgcctgggccgagttccagagcgcgatggagcgctactggtgcctg
cgctggctgaagcagcacaacgtgacccgcacggtcgcgcacgtgctgcgggaagacctg
gtccggttcgcgaacgcgccgctggtgacgcgggtcggagggatgccggagctggagcgg
ggcacggcggtggagttggatatcctggggatggatgagttgtcgctggagctggattgc
cggtatgtgggggagatcaggccggctgtggggggggaggggtag
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