Achromobacter veterisilvae: WHX56_10115
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Entry
WHX56_10115 CDS
T10582
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
avh Achromobacter veterisilvae
Pathway
avh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WHX56_10115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avh03019
]
WHX56_10115
Enzymes [BR:
avh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WHX56_10115
Messenger RNA biogenesis [BR:
avh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WHX56_10115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
LBP_BPI_CETP_C
HEM4
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WXR75833
UniProt:
A0A446C606
LinkDB
All DBs
Position
2189403..2190869
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AA seq
488 aa
AA seq
DB search
MTESTQPVAPAAEAPAPTFADFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGA
AQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQT
PLRSAVVFGGVDIGPQKEALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRML
DMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPIEIEVAARNATAATITQ
IAYKMPSDAKRAAVVHLVKSRGLNQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQA
DRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGAS
GEAIALFTADEERYLLDIEKLIKREVPRGTLDVPADLVARSHRRSDERRGAAPAREGRGD
RGDRGRPADRRSGYASGAPRQPVDDFFLKPYEPSASSAQADAPASKPNGGSSAPKRQIAV
LLGGSRKP
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatccactcaacctgtagcacccgccgctgaagcccccgcgccgacgttcgcc
gatttcgggctgcaccccctgctgttgcagtccatcgccgaaaccggctacaccactccc
acgcccatccaggcccaggccatccccgtcgtggtggaaggccgcgacgtcatgggcgcc
gcgcagaccggcacgggcaagacggcggctttcacgctgcccatcctgcaccgcctcatg
ccgctggccaacaccagcgcatcgcccgcgcgccatccggtgcgcgcgctgatcctcacg
cccacgcgcgaactcgcggaccaggtatacgaaagcgtcaagcgctacagcaagcagacg
ccgctgcgttccgcggtggtgttcggcggcgtggatatcggcccgcagaaagaagcgctg
cgccgcggatgcgaaatcctggtggccacgcccggccgcctgctcgaccacgtcgaacag
aagaacgtgaacctgagccaggtcggcatcctggtgctcgacgaagcggaccgcatgctg
gacatgggcttcctgcccgatctcgagcgcatcatccgcctgctgcccgcgcagcggcag
ggcctgctgttctcggccaccttcagcaacgaaatccgcaagctcggccgttcgtacctg
aaccaccccatcgaaatcgaagtcgcggcgcgcaacgccaccgcggcgacgatcacgcag
attgcctacaagatgcccagcgacgccaagcgcgccgccgtcgtgcacctggtgaagtcg
cgcggcctgaaccaggtcatcgtgttctccaataccaagatcggcacggcgcgcctggca
cgcgaactggagcgcgacggcgtcaaggccgaatcgatccacggcgacaagacccaggcc
gaccgcatgaaggcgctggaagccttcaaggccggcgaactggaagtgctggtggccacc
gacgtggccgcgcgcggcctggacgtggccggcgtgccttgcgtgatcaactacgacctg
ccgtacaacgccgaagactacgtgcaccgcatcggccgcaccggccgcgcgggcgcgtcg
ggcgaggccatcgccctgttcacggccgacgaagagcgctacctgctcgacatcgaaaaa
ctcatcaagcgcgaagtgccgcgcggcaccctggacgtgccggccgacctggtcgcgcgc
agccaccgccgcagcgacgagcgccgcggcgcggcgccggcgcgcgaaggccggggcgat
cgcggcgatcgcggccgtccggccgaccgccggtccggctacgcttccggcgcgccgcgc
cagcccgtggacgatttcttcctgaagccctacgaaccctcggcctcgtccgctcaggcc
gacgcgcccgcgtccaagcccaatggcggttcgtccgcgccgaagcggcagatcgccgtc
ctgctgggcggcagccgcaagccctga
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