Achromobacter veterisilvae: WHX56_13285
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Entry
WHX56_13285 CDS
T10582
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
avh Achromobacter veterisilvae
Pathway
avh03030
DNA replication
avh03410
Base excision repair
avh03420
Nucleotide excision repair
avh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WHX56_13285 (polA)
03410 Base excision repair
WHX56_13285 (polA)
03420 Nucleotide excision repair
WHX56_13285 (polA)
03440 Homologous recombination
WHX56_13285 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avh03032
]
WHX56_13285 (polA)
03400 DNA repair and recombination proteins [BR:
avh03400
]
WHX56_13285 (polA)
Enzymes [BR:
avh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
WHX56_13285 (polA)
DNA replication proteins [BR:
avh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WHX56_13285 (polA)
DNA repair and recombination proteins [BR:
avh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
WHX56_13285 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WHX56_13285 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WXR76425
UniProt:
A0ABZ2S639
LinkDB
All DBs
Position
2883300..2886017
Genome browser
AA seq
905 aa
AA seq
DB search
MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDA
RGKTFRDDIYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAKR
AAEHDVHTIVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVASKFGVPPDRIVDYLMLVG
DTVDNVPGVTKVGPKTAAKWITEFGSIDKLVEGADGVKGVAGNNLRDAIPKFPLTRQLLT
VKCDCDLAGHVDSVDDLTPRPRDDAALTEIYEHYGFRTWLRELTGDAERVPAGDARIAHD
APAAPTELDYRIISDWAGFDAWMEKLEGASLVALDTETTSLDQMQARLVGLSLAVEPGVA
CYIPVAHRGPDGATQLPKAEVLARLKPWLEDATRAKLLHHAKYDAHVLANEGIKLAGIAE
DTMLQAYVLESHRGVGLNDLAQRYLGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHYAAED
ADFTLQLHRVLRPMVAADEGLNRIYRLEIQVSAVLTTIERNGVKVDAAELGRQSHKLGQE
MLRLEQKAYELAGQPFNLNSPKQLGEILFDRMQLPVVRKTAGGAPSTDEDVLTKLAQDYP
LPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTRYSQAAVITGRLASSDPNLQNIPVR
TEAGRRVREAFIAEQGMLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFG
VPLADVSTEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPGVAMYME
DTRRRAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTAADLIKMAMVAV
QDWLEAENLQTRMIMQVHDELVLEAPDAELDLVKETLPRLMCNVATLRVPLVAEVGMGKN
WEQAH
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaccttattactggtcgacggttcaagttacttgtaccgcgctttccacgct
atgcctgatttgcgcaacgcgcaaggcgaacccacgggggcgctctatggcgtggtgaat
atgttgcgcaagctggtatctgaccataaggcagagtatgccgcatgtattttcgatgcc
cgcggcaagacgttccgcgacgacatctatccggagtacaagtcgcatcgcccgcccatg
ccggaagacctggcggcgcagatcgagcccatccaccgcgccgtgcgggcgctgggctgg
ccggtgctggccatcgaaggggtggaagccgacgacgtgatcggcaccctggccaagcgg
gccgccgaacacgacgtgcacaccatcgtgtccaccggcgacaaggacctggcgcaactg
gtcaacagccacgtcaccctggtcaacaccatgagcggcgaagtgctggacgaagccggc
gtggccagcaagttcggcgttccgcccgaccgcatcgtggattacctgatgctggtgggc
gacacggtggacaacgtcccgggcgtgaccaaggtgggcccgaagacggccgccaaatgg
atcacggaattcggctccatcgacaagctggtcgaaggcgcggacggggtcaagggcgtg
gcgggcaacaacctgcgcgacgccattccgaagtttccgcttacgcgccagttgctgacc
gtgaaatgcgactgcgacctggcgggccacgtcgacagcgtcgacgacctgacgccgcgc
ccgcgcgacgacgcggcgctgaccgaaatctatgaacactatggctttcgcacctggctg
cgcgagctgaccggcgacgccgagcgcgtgcccgcgggcgacgcccgcatcgcccacgac
gcgcccgccgcgcccacggaactggactaccggatcatttcggattgggccggattcgac
gcctggatggagaagctggaaggggcgtccctggtggcgctggacaccgagaccacgtcg
ctggaccagatgcaggccaggcttgtcggcctgtcgctggcggtggagccgggcgtggcc
tgctacatcccggtggcgcaccgcggcccggacggcgccacccagttgcccaaggccgag
gtgctggcgcggctgaagccgtggctggaagacgccacgcgcgccaagttgctgcatcac
gccaagtacgacgcccacgtgctcgccaacgaaggcatcaagctggcgggcattgccgaa
gacacgatgctgcaagcctatgtgctggaatcgcaccgcggcgtgggcctgaacgacctg
gcccagcgctatctgggccgcagcggcgtgtcctacgaggacttgtgcggcaagggcgcc
aagcagatcgggttcgatgaggtcgcggtcgacaaggccggccactatgccgccgaagac
gccgacttcaccttgcagttgcatcgggtgctgcgcccgatggtggcggccgacgaaggc
ctgaaccgcatctaccggctggaaatacaggtgtcggcggtgctcaccaccatcgagcgc
aacggcgtgaaggtcgatgccgccgaactgggccgccagagccacaagctgggccaggaa
atgctgcggctggagcagaaggcctatgagctggccgggcagcctttcaacctgaattcg
cccaagcaattgggcgagatcctgttcgaccgcatgcagttgccggtcgtgcgcaagacc
gccggcggcgcgccgtccaccgacgaagacgtgctgaccaagctggcgcaggactatccg
ctgccgcaggtgctgctggaataccgcggcctgtccaagctgaagtccacctatacggac
aagctgccgcgcatgatcaatccggacacggggcgcgtgcacacgcgctattcccaggcg
gccgtgatcaccggccgcctggcctcgtccgatcccaacctgcagaacatcccggtgcgc
accgaagccggccgccgcgtgcgcgaggcgttcatcgccgagcagggcatgctgctgtcc
gccgactactcgcagatcgaactgcgcatcatggcgcacgtgtccgacgacgccaacctg
caacgcgccttcgccgcgggcgaggacatccaccgcgccacggcgtcggaagtgttcggc
gtgccgctggcggacgtgtccacggagcagcgccgcgcggccaaggccatcaacttcggc
ctgatctacggcatgggggtgttcggcctggcgtccaacctgggcatcacgcgcgacgcc
gcgcaggcctatatcgaccgctacttcgcccgctatcccggcgtggcgatgtacatggaa
gacacccgccgccgggcgcgcgaacagggctatgtggaaaccgtcttcggacgccgcctg
caactgccggagatccgcggcgcctccggcccgcgccggcaaggggcggagcgggcggcc
atcaatgcgcccatgcagggcacggcggccgacctgatcaagatggccatggtcgcggtg
caggattggctggaagccgaaaacctccagacgcgcatgatcatgcaggtgcacgatgaa
ctggtgctggaagcgccggacgccgaactggatctggtcaaggaaacgctgccgcgcctg
atgtgcaatgtggcgaccttgcgcgttccgctcgtggccgaagtcggcatgggcaagaac
tgggagcaggcccactag
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