KEGG   Allorhizobium ampelinum: Avi_0120
Entry
Avi_0120          CDS       T00851                                 
Symbol
rnd
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
avi  Allorhizobium ampelinum
Brite
KEGG Orthology (KO) [BR:avi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:avi03016]
    Avi_0120 (rnd)
Enzymes [BR:avi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     Avi_0120 (rnd)
Transfer RNA biogenesis [BR:avi03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Avi_0120 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: ACM35067
UniProt: B9JYH1
LinkDB
Position
1:complement(112465..113091)
AA seq 208 aa
MASTIRYHEGDISSEDAARYTRAIAIDTETLGLIPRRDRLCVVQLSPGDGTADVIRIAPG
QRQAPNLTALLEDPTREKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGL
KDNLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMDH
ATACFEFLPTRAKLDLLGWEETDIFAHS
NT seq 627 nt   +upstreamnt  +downstreamnt
atggcttccaccattcgctaccatgaaggtgatatcagcagcgaagacgcggcgcgctat
acccgcgccatcgccatcgacaccgaaacgctggggcttatcccccgccgcgaccggctc
tgcgtggtgcagctttcgccgggtgacggcacagccgacgtcattcgcattgcgccgggc
cagcgccaggcgcccaacctgaccgccctgctggaagacccgacccgggaaaaaatcttc
cattatggccggttcgacatcgccgtgctgttccatacgtttggtgtcaccaccacgccg
gtgttctgcacgaagatcgcctcgcgtctgtcgcgcacctataccgaccggcatggacta
aaggacaacctcaaggaaatgctggatgtggatgtgtccaaggcccagcaatcctccgac
tgggcggcagaaacgctgtctccggcgcagctcgaatatgccgcctccgacgtgctctat
ctgcatgcgctgcgcgacaagctaaccgcccggctggtgcgcgatggccgcatggaccac
gccaccgcctgcttcgagttcctgccgacccgggccaaactggacctgctgggctgggaa
gagaccgatattttcgcccatagctga

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