Allorhizobium ampelinum: Avi_0175
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Entry
Avi_0175 CDS
T00851
Symbol
pnpA
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Avi_0175 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avi03019
]
Avi_0175 (pnpA)
03016 Transfer RNA biogenesis [BR:
avi03016
]
Avi_0175 (pnpA)
Enzymes [BR:
avi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Avi_0175 (pnpA)
Messenger RNA biogenesis [BR:
avi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Avi_0175 (pnpA)
Transfer RNA biogenesis [BR:
avi03016
]
Prokaryotic type
tRNA degradation factors
Avi_0175 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ACM35106
UniProt:
B9JYL0
LinkDB
All DBs
Position
1:162773..164917
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AA seq
714 aa
AA seq
DB search
MFNVHSVEIEWAGRPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH
DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA
GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDHSA
LEAEMLSIAEAELRDAYKITQKADRYTAVDAVKAKVKAHFFPEGAEPKYTNEVIGAVFKH
LQAKIVRWNILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGEMAN
AITEGRSQLGEFAPRIEVMTIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKIAS
ASGKEIEAARKWIHSIVAEPEIGVVYEGTVVKTADFGAFVNFFGSRDGLVHISQLAVDRV
AKTQDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIVGDKKAEGDAAAE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgttcacagcgttgaaatcgagtgggccggccggccgctgaagctggaaacc
ggcaagatcgcccgtcaggctgacggcgccgttctcgccagctacggcgagaccgttgtt
ctggccaccgtcgtttccgccaagtcgccgaagccgggtcaggatttcttcccgctcacc
gtcaactatcaggaaaagacctatgccgccggtaagatcccgggtggctatttcaagcgc
gaaggccgtccgagcgaaaaggaaaccctggtttcccgcctgatcgaccgcccgatccgc
ccacttttcccggaaggttacaagaacgacacccaggtcgtcgtgaccgttattcagcac
gaccttgaaaacgatccggacgttctgtcgatggttgccgcttcggctgccctgacactg
tctggcgtaccgttcatgggcccggtcggcggtgcgcgcgttggctatatcaatggcgaa
tacgttctcaacccgcatctcgacgagatggatgaatccgttctcgacctcgtggttgcc
ggtacgcaggatgccgtcctgatggttgaatccgaagccaaggaactgaacgaagacgtc
atgctcggcgccgtgatgttcggtcaccgtggcttccagccggtcatcgacgcgatcatc
aagctcgccgaagtggctgccaaggagccgcgcgaattcgaaccggaagatcattccgct
ctcgaagccgaaatgctctcgattgccgaagccgaactgcgcgacgcctacaagatcacc
cagaaggctgatcgttatacggccgtcgatgccgtaaaggccaaggtcaaggcacacttc
tttccagagggtgcagagcctaaatacaccaacgaagtgatcggcgcggtcttcaagcac
ctgcaagccaagatcgttcgctggaacattctcgacaccaagagccgtatcgatggccgt
gacctcgaaacggttcgtgcgattgtctccgaagtcggcatcctgccgcgtacgcacggt
tcggcgctgtttacccgtggcgaaacccaggcgatcgtggttgccacgctcggcactggc
gaagatgagcagtatgttgacagcctgacgggcatgtacaaggaacgtttccttctgcat
tacaacttccctccttattcggttggtgaaactggccgcatgggctccccgggccgccgc
gaaatcggccatggcaagctggcatggcgcgccattcgcccgatgctgccttcgcctgaa
cagttcccctacacgctgcgcgtcgtctccgagatcaccgaatcgaacggctcgtcctcg
atggcaacggtttgcggcacctcgctggcgctgatggatgcgggcgttccgctggccaag
ccggttgctggtatcgccatgggcctgatcctggaaggcgagcgttttgctgttctctcc
gacattctcggcgatgaagatcatctcggcgatatggacttcaaggtggctggtacggaa
gccggtatcacctcgttgcagatggacatcaagatcgccggtattaccgaagagatcatg
aaggttgccctggcgcaggcccagaacggccgcaagcacattctcggcgaaatggccaat
gccatcaccgaaggtcgctcgcagctcggcgaattcgcaccgcgcatcgaagtcatgacc
atcccggtcgataagatccgtgaagtcatcggttccggtggtaaggttatccgcgaaatc
gtcgaaaaaaccggcgccaagatcaacatcgaagacgatggtacgatcaagatcgcctct
gcttccggtaaggaaatcgaagccgcccgcaagtggattcactcgatcgttgctgagcct
gaaatcggcgttgtctatgaaggcacggtcgtcaagaccgctgacttcggcgctttcgtc
aatttcttcggttcgcgagacggtctcgtccacatcagccagctggctgtagaccgtgtt
gccaagacccaggatgtggtcaaggaaggcgacaaggtttgggtcaagctgatgggcttt
gacgagcgcggcaaggttcgcctgtccatgaaggttgtcgatcaggcaaccggcaaggaa
atcgtcggcgacaagaaggccgaaggcgacgctgccgctgaataa
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