Allorhizobium ampelinum: Avi_1827
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Entry
Avi_1827 CDS
T00851
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Avi_1827 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avi03021
]
Avi_1827 (rpoC)
03400 DNA repair and recombination proteins [BR:
avi03400
]
Avi_1827 (rpoC)
Enzymes [BR:
avi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Avi_1827 (rpoC)
Transcription machinery [BR:
avi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Avi_1827 (rpoC)
DNA repair and recombination proteins [BR:
avi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Avi_1827 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
BSH_RND
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACM36309
UniProt:
B9JVM9
LinkDB
All DBs
Position
1:1521965..1526176
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKQNQLLSEEEYMMAVDEYGEDQFTA
MIGAEAIFEMLASMNLERIAGELRQDLADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMVFSDIGELHHALE
NKVVTLHSKIRGRFKTVDADGKPVSKIFETTPGRMLIGELLPKNVNVPFDTCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFRHACKAGISFGKDDMVIPDSKVKIVGDTESL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEDMMARIKAVEFDPETGRQKPMNAIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNLVDCGTDKGLTMTAIVDAGQVVASIGVRVLGRT
ALDDIDHPVTGERIVDAGRMILEADVIEIEKAGIQSIRIRSALTCEVQTGVCSICYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN
MLRNSDGIYVAMGRSIAVTILDERGVERSSQRVAYGSKLFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGVVHFEDLVDGISVLEATDESTGITKRQVIDWRSTPRGADLKPAIVIKDTQG
NVLKVPRGGEARFQLSVDAILSVEPGQRVSQGDVLARSPMESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDSGDSQYIVGDNVDRIELDEANERLVEEGKKPAFGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
GTGADLATPMLRDMAGEGAPAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaacccgcaggtccctgcgcagcatttcgattcc
atccggatttcgattgcctcgccggagaagatcctgtcctggtcgtatggcgaaatcaaa
aagcctgagaccatcaactaccgcactttcaagccggagcgcgacggtctgttctgcgcc
cgtatctttggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtggaagtcaccctgtcgcgggttcgccgt
gagcgcatgggccatattgagctggccgctccggttgcccatatctggttcctgaagtcg
ctgccttcgcgcatttcgaccctgctcgacatgacgttgaaggatgtggagcgcgttctc
tacttcgaaaactacatcgtgactgaaccgggcctcaccgctctgaagcagaatcaattg
ctctctgaagaagagtatatgatggctgtggacgaatatggtgaagaccagttcaccgcc
atgattggtgctgaagccatctttgaaatgctggcctcgatgaatctcgagcgcatcgct
ggcgaattgcgtcaggaccttgccgacaccacgtcggacctgaagcagaagaagctgatg
aagcgtctcaagatcgttgagaacttcatggaatcgggcaatcgtcctgaatggatgatc
atgaaggttgttcccgtgattccgccggaccttcgtccgttggttccgctggatggtggc
cgttttgcgacctccgacctgaacgatctctatcgtcgcgtcatcaaccgtaacaaccgt
ttgaagcgtttgatcgagctgcgcgctccgggcatcatcatccgtaacgaaaagcgcatg
ttgcaggaatctgtagacgcgctgttcgacaacggccgccgtggccgcgtcatcaccggt
gccaacaagcgtccgttgaagtcgctgtccgatatgctcaagggcaagcagggccgcttc
cgtcagaaccttctcggtaagcgcgtcgactattctggtcgttcggttatcgtgactggt
ccagaactgaagctgcaccagtgcggtctgccaaagaaaatggcactcgaactgttcaag
cctttcatctacgcccgtctcgacgccaagggttattcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagccggaagtttgggatattctcgacgaggttatccgcgaa
catcccgttctgctgaaccgcgcaccgacactgcaccgtctgggtatccaggccttcgaa
ccaattctggttgaaggcaaggccattcagctgcatccgctcgtctgcacggcctttaac
gccgacttcgacggcgaccagatggctgttcacgtgccgctttcgctggaagcccagctt
gaagcccgcgtgctgatgatgtccaccaacaacattctgcatccggcaaacggtgcgccg
atcatcgttccttcgcaggacatggttctcggtctctactatttgtcgatcatgaaccag
aatgagccgggcgaaggcatggtcttctccgacatcggtgaattgcatcacgcccttgaa
aacaaggtggtgacgctgcactccaagatccgtggtcgtttcaagaccgtggatgcggac
ggcaagcctgtttcgaagattttcgaaacaacaccgggccgtatgctgattggcgaactt
ctgccgaagaacgtcaatgtgccgtttgacacctgcaatcaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaggacacggtgattttc
tgcgaccggatcatgcagcttggcttccgccatgcatgtaaggctggcatttccttcggt
aaggatgacatggtcattcctgactccaaggtgaagatcgttggcgacaccgaatccttg
gtgaaggaatacgaacagcagtataacgacggtctgatcacccagggtgagaagtacaac
aaggtcgttgacgcctggggtaaggcgactgaaaaggttgcggaagacatgatggcccgc
attaaggctgttgagttcgatccggaaactggccgccaaaagccgatgaacgcgatttac
atgatgtctcactccggtgcgcgtggttctccgaaccagatgcgtcagctgggtggtatg
cgtggtctcatggccaagccatcgggcgaaatcattgaaacaccgatcatttcgaacttt
aaggaaggtctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctt
gcagacacggccttgaagaccgcgaactcgggttacctgacccgtcgtctggttgacgta
gcgcaagattgcatcgttaatctggtcgattgcggtaccgacaagggcctgaccatgacg
gcgattgttgacgccggtcaggttgtggcttccattggtgtgcgtgttctcggtcgtacg
gcgctggacgatatcgatcatccggtcacgggtgagcggatcgttgacgctggtcgcatg
atccttgaagccgatgtcattgaaatcgagaaggctggtattcagtcgatccgtattcgt
tcggctctgacctgcgaagttcagaccggcgtatgctcgatctgctacggtcgcgacctt
gcccgtggtacacctgtgaacatgggtgaagctgtgggtgttatcgccgcgcagtccatc
ggtgagccaggtacccagctgaccatgcgtacgttccacttgggcggtacggccaacgtg
gttgaccaatcgttcctggaagcctcctatgaggggactatccagatcaagaaccgcaac
atgctgcgcaactctgacggcatttatgtcgccatgggccgtagcatcgcggtgacgatc
ctggacgaacgcggtgttgagcgctcctcgcagcgtgttgcctatggttccaagttgttt
gtcgacgatggcgacaaggtcaagcgcggtcagcgtctggctgagtgggacccatacaca
cgcccgatgatgaccgaagtggaaggtgtcgttcattttgaggatctggtcgacggtatc
tccgttctggaagccaccgacgaatccactggtatcaccaagcgtcaggttatcgactgg
cgttcgacgccacgtggcgccgatttgaagccggcaattgtcatcaaggacactcagggc
aatgtgctcaaggttccgcgtggtggtgaagcccggttccagctgtcggtcgatgcaatc
ctgtcggttgaacccggccagcgcgtctcccagggtgacgttcttgctcgttcgccaatg
gagagcgccaagaccaaggacatcaccggtggtctgccgcgtgttgccgaattgttcgaa
gcccgtcgtccgaaggatcacgccatcatcgctgaaatcgatggtacgatccggttgggc
cgcgactacaagaacaagcgtcgcgttatcatcgagccggcggaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggaaggcgactatatcgaa
aagggtgactatatcctcgacggtaatccggctccgcacgatattctggcgatcaagggt
gtcgaggcgctggcaagctacctggtcaacgaaatccaggaagtctatcgcttgcagggc
gttgtgatcaacgacaagcacatcgaggtgattgttcgccagatgctgcagaaggtcgaa
atcaccgacagcggcgacagccagtatatcgttggcgacaatgtcgaccgtatcgagctg
gacgaagccaacgaacgtctggttgaagaaggcaagaagccggcctttggcgatccggta
ttgctcggtatcaccaaggcctcgctgcagacgccgtccttcatctcggctgcgtccttc
caggaaaccaccaaggttctcacggaagcggcaattgccggcaagaccgatacactgcaa
ggcctgaaggaaaacgtcatcgtcggtcgtctgatcccggccggtaccggtggtaccatg
acccagatccgtcgtatcgccacctcgcgtgatgacctcattctcgaggaacgtcgcaag
ggaaccggtgcggatctcgcaaccccgatgctgcgcgatatggcaggcgagggtgctcct
gccgccgagtaa
DBGET
integrated database retrieval system
