Allorhizobium ampelinum: Avi_2871
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Entry
Avi_2871 CDS
T00851
Symbol
deaD
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Avi_2871 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avi03019
]
Avi_2871 (deaD)
03009 Ribosome biogenesis [BR:
avi03009
]
Avi_2871 (deaD)
Enzymes [BR:
avi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Avi_2871 (deaD)
Messenger RNA biogenesis [BR:
avi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Avi_2871 (deaD)
Ribosome biogenesis [BR:
avi03009
]
Prokaryotic type
rRNA helicases
Avi_2871 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACM37067
UniProt:
B9JY37
LinkDB
All DBs
Position
1:2387742..2389763
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AA seq
673 aa
AA seq
DB search
MTDYDGIVPAIAEALRKRGYATLTPVQQAMIDTDLEGRDALVSAQTGSGKTVAFGLALAP
TLLGSENRFGRAVKPLALCIAPTRELALQVQRELEWLYENTGAIFATCVGGMDIRNERRA
LERGAHIIVGTPGRLRDHITRRALDLSGLRAVVMDEADEMLDLGFREDLEFILKESPDER
RTLMFSATVPRSIADLARSYQRDAKRIETVSEQKQHIDIEYRAMLTVPADKENAIINALR
FYEARNAIVFCSTRANVNHLTARLHNRGFSVVALSGELSQSERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGNKGVSALIVPMSQRRKAERIL
GGANVQAAWVKPPSADEVIARDDERLLADPVFSEAISEEEAATIARLLEAHGADKITAAY
LRAYRSTRSAPEDLMEVKIQAERPRRENDTYEPNTPSRPRSEFGPSVWFSLSVGRRQSAE
PRWLIPMLCRNGNITKNEIGAIKMQPEETFVEIAQANLEQFLTALGPNKTLERGIIVKQL
PGMPDFNAPPKERAARPPRDDSDFAERKPRAAQGDKKPYAAKAEATERRPYKDDLAKADD
DVWGNPKPASSFKKKSNAAGDSRSWDKPKADWAGKSDKPAYAGKGEKPAYAGKPKGKFEG
PAGGAKKSFKPKG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattatgacggcatcgtcccggcgattgccgaggccttgcgcaaacgtggctac
gccaccctcacccccgttcagcaagcgatgatcgataccgatctcgaaggtagggatgcg
ctggtttcggcccagacaggctccggcaagacagtggctttcggcctggcgctggctccg
accctgctgggtagcgaaaaccgtttcggtcgggccgtcaagcctttggcgctgtgcatt
gcgccaacccgcgagctggccttgcaggtgcagcgcgagctggaatggctctatgaaaac
actggagcgatttttgccacctgcgtcggcggcatggacatccgcaacgagcgtcgggcg
ctggagcggggcgcccatatcatcgtcggcacacctggtcgtttgcgcgaccacattacc
cgccgggcgctcgacctctccggcctgcgcgccgtggtgatggacgaggctgacgaaatg
ctggatctcggcttccgcgaggatctggaattcatcctgaaagaatcgccggacgagcgc
cgcaccctgatgttctcggccaccgtgccgcgctccatcgccgatctggcccgcagctat
cagcgcgatgctaagcggatcgagacggtttccgaacagaagcagcatatcgatatcgaa
tatcgcgccatgctgaccgtgcctgccgacaaggaaaacgcgatcatcaacgcgctgcgc
ttttatgaagcccgcaacgccatcgtgttctgttccacccgcgccaatgtcaaccatctg
accgcccgcctgcacaatcgcggcttttccgtcgtggccctgtcaggcgaactttcgcag
agcgagcgcacccatgcgctgcaagccatgcgcgatggccgcgcccgtgtatgcgtcgcg
acagacgttgcagcccgcggcattgatctccccggcctggaactggttatccatgccgac
ctgccgaccaattccgaaaccctgttgcaccgctctggccgcacaggccgcgccggcaac
aagggcgtttcggcactgattgtaccgatgagtcagcgccgcaaggccgaacgtattctg
ggcggtgccaatgtccaggccgcctgggtcaagccgccttccgccgatgaagtgattgcc
cgcgacgatgagcgcctgctggccgatccggtgttcagcgaggccatcagcgaggaagaa
gccgccaccatcgcccggttgctcgaggcgcatggcgcagacaagatcacggctgcctat
ctgcgcgcctatcgcagcacccggtctgccccggaagacctgatggaggtcaagatccag
gcggaacgtccccgccgcgagaatgacacctatgagcccaacaccccgtcgcgtccgcgc
agcgagtttggccccagcgtctggttctcgctgtccgttggccgccgccagagcgcggag
ccgcgttggctgattccgatgctgtgccgcaacggcaatatcaccaagaacgaaatcggc
gcgatcaagatgcagccggaagagaccttcgtggagatcgcccaggccaatctcgagcag
ttcctgacggctcttggccccaacaagacgctggaacgcggcattatcgtcaagcaattg
cctggcatgcccgacttcaacgcgccgccaaaggagcgcgcagcccgtccgccacgcgac
gatagcgactttgccgaacgcaagccccgcgctgcccaaggcgacaagaagccctatgcc
gccaaggccgaagccaccgagcgccgcccctacaaggacgacctggccaaggccgatgac
gatgtttggggcaatccgaagcctgcgtcttccttcaagaaaaaatccaatgccgctggc
gacagccgcagctgggacaagcccaaggccgattgggcgggcaagagcgataagcccgct
tatgcaggcaagggcgagaagcccgcttatgcaggaaagccaaagggcaagttcgaaggc
ccggctggcggtgccaagaaaagcttcaagccgaaaggctga
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