Allorhizobium ampelinum: Avi_3946
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Entry
Avi_3946 CDS
T00851
Symbol
sbcC
Name
(GenBank) exonuclease protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
avi
Allorhizobium ampelinum
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avi03400
]
Avi_3946 (sbcC)
DNA repair and recombination proteins [BR:
avi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Avi_3946 (sbcC)
Archaeal homologous recombinant proteins
Avi_3946 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
Cytochrom_B562
AAA_21
DUF87
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
ACM37850
UniProt:
B9JT07
LinkDB
All DBs
Position
1:3310963..3314037
Genome browser
AA seq
1024 aa
AA seq
DB search
MRPVRLVMQAFGPYAGRQSIDFREAVAAGLFGIYGQTGSGKSTIFSAMTFALFGEAARAE
QDTISLRSDHASPDLATEVEFVFDLGARRYVIRRRPEQMRPKQRGGGETRDAHEAWLFDA
TGLGESEITAAQPGKVLAEKKIGLVREKITDLLGYGPEQFKQIVLLPQGRFEAFLAAKTQ
ERQDILSALFDVSLYRRLAAKLKSDAESAERLVREERAVCLRRLGADGFDSMQALMDGIA
EAASSLTDRQQAEQHLRAEADAARASLQAARDTDNQFKSMDAARQAKQKTLDQATDMAAL
QAQVTSAERARTLADAENRVIEAQRECKDAEAALSLAMQIQTSTQATAQQAQAAYLQQIQ
SKSEIEALRRTIDQMERDRDVLEKATGLTASVEAAKRRVQEEQAAFRTAEAGLAELTGKR
QVREQALKQARLAHERRQSLTANLTALQAQVKQAEIVERAEKDLQQAYQQLNHSANIHAE
RQAQTTKAAALFDQAERRLASAQALHLAAKLGPGLPCPVCGATDHPTPAMGDSAEAGLDK
AFREAKQALEKARLEEQHSATAHASAQATVDERQGRLGDLERPEQQIQELRQDMEGMERA
LRGLGPAIDIAAAETALENLGKAITDAQARLDQHRDRLAALKTETSNGETRLAEMLSGIA
AHLRDKAALERQLQQSKALMTSRETALKRSEEAATATREAAFSAHKDSEAAENILTERQA
RFEKENQGFEDRLRDAGLTRDDLNRLKPAIMTLERDKATIETHQRQLQRDSEKLLELETA
LTGKQPPDLLAHQEALASAEAAFDTAVTLRAATAARLDHLQNLRKELAGIAKRLDEAEAT
SGPLRELAGLFDAQNRQKLKLETFAIGAMFEQVLQAANLRLGPMTNGRYRLERDIESGGR
GKRGLGILAFDVHTGKARPTATLSGGETFIAALALALGLADVVESASGKVRLDTIFLDEG
FGSLDTENGSGTLDLVLQALNSLASQNRTVGLISHVPLVQEAIPNGFYVRKDSDGSHVEA
RGMM
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgagacctgtccgcttggtgatgcaggcctttggcccctatgccggacgccaatccatc
gattttcgcgaagccgtcgccgctggcctgttcggcatctacggccagacgggatcgggg
aaatcgacgattttcagcgccatgacctttgccctattcggggaagcggcgagagccgag
caggacaccatctcgctgcgctccgaccatgcttcgcccgacctagcaaccgaggtggaa
ttcgtattcgatcttggcgcccgccgctatgtcatccgccggcgtcccgaacagatgcgg
ccaaaacaacgcggcggtggcgaaacccgggacgcccacgaggcctggctgttcgacgcc
accgggcttggtgaaagcgaaattaccgccgcccagccgggcaaggtgctggctgaaaaa
aagatcggtctggtacgcgaaaaaatcaccgatctgctcggttacggtcctgaacagttc
aagcagatcgtgcttctgccgcagggccggttcgaggcctttcttgccgccaaaacccag
gaacgacaagatattctcagcgccctcttcgatgtgtcgctctatcgccggctagcggca
aaactgaagagcgatgccgaaagcgccgaacggctggtgcgcgaggagcgcgccgtctgc
cttcgccgcctcggtgccgacgggttcgacagcatgcaggcactgatggacgggattgcc
gaggcggcatcgtcgctcaccgaccggcagcaagcggaacagcatttacgggctgaggcg
gatgccgcccgcgcttcgttgcaagcagcgagagacaccgataaccagttcaagtccatg
gacgccgctcgtcaggcaaaacagaaaaccctcgaccaggccacagacatggccgcgctg
caagcgcaggtcacatccgccgaacgcgcccggacactggccgatgcggagaaccgggtg
atagaggcacagcgcgagtgcaaggatgctgaggccgcgctgtctctggcaatgcagatc
cagacatcgacgcaggcaacggcacaacaagcgcaagctgcctaccttcaacaaatacaa
agcaaaagcgaaatagaggcgctgcgccggacaatcgatcagatggaacgcgatcgagat
gtgctggaaaaagccaccggcctcaccgcatcggtcgaggcggccaaacgacgcgtgcag
gaggaacaggccgcattccgaaccgcagaggccggtcttgccgagctgactggcaagcgg
caagtccgggaacaggcattgaaacaggcccgccttgcccatgagcgcaggcaatcattg
accgcaaaccttacggccttgcaggcgcaggtgaagcaggctgagattgtggaacgggcc
gaaaaagatctgcaacaggcctaccagcagttaaaccatagtgcaaacatccatgccgaa
cgacaggctcagaccaccaaggccgcagcactgttcgatcaggccgaacgtcggcttgcc
tccgcgcaggctctccatttggcagcaaagctggggcctggtctcccctgccctgtttgt
ggcgcaaccgaccatccgacccctgcgatgggggacagcgccgaggccggattggacaag
gcctttcgcgaagcgaaacaggcgctggaaaaggcgcgattggaagagcagcatagcgct
accgctcacgcctctgcgcaagccaccgttgatgaacgccaaggtcgcctaggagatctg
gagcggcccgagcagcagatccaggagttgcgccaggacatggaagggatggagcgtgcc
cttcgcgggctcggcccggccatcgatatcgccgctgccgaaaccgcgctggaaaatctt
ggaaaagccatcaccgatgcccaagcccggctggatcagcaccgggatcggctggccgcg
ctgaagaccgagaccagcaatggtgaaacgcgacttgccgaaatgctctccggcatcgca
gcacatctgcgggataaagcagccctggagcgccagcttcaacagtcgaaggccttgatg
acaagccgggaaacggcattgaagcgcagcgaagaagccgcaacggcaacgcgcgaagcg
gcattcagcgcgcacaaagacagcgaagccgccgaaaacatcctgaccgaaagacaagcc
cgcttcgaaaaggaaaatcagggtttcgaggatcgcctgcgcgacgctggcctgacgcgc
gacgatctgaaccgcctgaaacctgcaatcatgacacttgagcgtgacaaagcgacgata
gagacccaccagcgccaattgcagcgcgacagtgaaaagctcttggaattggagaccgcg
ctcacgggtaagcagccgccggaccttctcgcccatcaagaggcgcttgcgtccgctgaa
gccgctttcgatacagccgttacactgcgcgcagcaacggcggctcggctcgatcacctg
caaaacttgcgcaaagagcttgccggcatcgccaaacggcttgacgaagccgaggcaacc
tccggccctctgcgggagctggctggcctgttcgatgcccagaaccggcagaaactgaaa
ctggaaaccttcgccatcggcgcgatgttcgaacaggtcttgcaagcagccaacctgcgg
ctgggaccgatgaccaatggccgctacaggctggaacgtgacatcgaatccggtggccgg
ggtaagcgtgggctgggcattctcgccttcgatgtccataccggcaaggcaagacccacc
gcgacactttccggtggtgaaaccttcatcgccgccctggcacttgccctgggtctggcc
gacgtggtcgaaagcgccagcggcaaggtgcgcctcgatacgattttcctcgatgaaggc
ttcggcagccttgatacggaaaacggctcaggcacacttgatctggtcttgcaggctttg
aatagcctagccagccagaaccgcactgttggactgatatctcatgttccgcttgttcag
gaagcaattccgaatggtttttacgtcaggaaggacagcgatggcagccatgtggaagct
cgaggaatgatgtaa
DBGET
integrated database retrieval system
