Allorhizobium ampelinum: Avi_4176
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Entry
Avi_4176 CDS
T00851
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
avi
Allorhizobium ampelinum
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avi03016
]
Avi_4176
Enzymes [BR:
avi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Avi_4176
Transfer RNA biogenesis [BR:
avi03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Avi_4176
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ACM38024
UniProt:
B9JUA1
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All DBs
Position
1:complement(3517528..3518115)
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AA seq
195 aa
AA seq
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MPRLFTALEIPRNVALSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEIVDRLDR
IDRPEFQLSLNGIGSFGSKKPHSIWAGVTPHPQMTALQGEIERICQRVGLPPDPRKFMPH
VTLARLKSSRLDDVVHYLSGRGNFQTAPFFVPRFVLMSSKESVGGGPYLKEEIFPLYEER
SEVSFSEHAEHSLNG
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgccgagattgttcactgccctcgaaattccgcgcaacgtggccttgagcctgtctttg
ctgcgcggcgggcttccgggagcccgatggatcgatgtggaaaattaccatatcaccctt
cggttcataggcgatatcgacgggcgcaccgccgatgagatcgtcgataggctggatcgc
atcgaccggccggaattccagctcagtctgaacggcatcgggtccttcgggtcgaaaaaa
ccgcattccatctgggcaggtgttacaccgcatccgcagatgacggcgctccagggcgaa
atcgagcggatctgccaacgagtggggctgccacccgacccccgaaagtttatgccgcat
gtgacactggcgcggctgaagtcatcgagactggatgacgttgttcattatttatcaggg
cgcggtaatttccagaccgcgccctttttcgttccaagattcgtgctgatgtcctccaag
gaatcggtggggggtggcccttatctgaaggaggaaatcttccccctctatgaagagcgc
tcagaggtcagtttttcagaacatgccgagcattcgctgaacggataa
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