KEGG   Allorhizobium ampelinum: Avi_4391
Entry
Avi_4391          CDS       T00851                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
avi  Allorhizobium ampelinum
Pathway
avi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:avi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Avi_4391 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:avi03021]
    Avi_4391 (rho)
   03019 Messenger RNA biogenesis [BR:avi03019]
    Avi_4391 (rho)
Transcription machinery [BR:avi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Avi_4391 (rho)
Messenger RNA biogenesis [BR:avi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Avi_4391 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 NACHT S1CSD-TOTE-2 AAA DUF6360
Other DBs
NCBI-ProteinID: ACM38192
UniProt: B9JV54
LinkDB
Position
1:complement(3723135..3724400)
AA seq 421 aa
MAEMKLQELKSKSPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV
LQDGFGFMRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFEDPEKIRHKVHFDNLTPLYPNERFKMELEIPTSKDLSSRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPS
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNGDFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagctacaagaactcaagagcaaatcgccaaccgatctgctggccttt
gcggaatcgcttgaggtcgaaaatgccagcacgatgcgcaaacaggaattgatgtttgcc
attttgaaaatgctggccagccaggatgtcgaaatcattggtgaaggcgttgtcgaagtc
ctgcaggatggtttcgggttcatgcgttcggccaatgccaactatttgccgggtccggac
gacatctacatttcgccgtcgcagatccgtcggttttcgctgaagaccggcgataccgtc
gaaggaccgatccgcggacccaaggaaggcgagcgctatttcgcgctgctgaaagtcaat
acgatcaatttcgaggatccggaaaagatccgccataaggtccacttcgataacctgacg
ccgctctacccgaatgagcggttcaagatggaactggagattccaacttccaaggacctt
tcgtcccgggtcatcgatctggttgcgccgcttggcaaaggccagcgcggtttgatcgtc
gcgccgccgcggactggtaaaaccgtcctgctccagaatatcgctcattccattaccgct
aaccatccggaatgctatctgatcgttcttctgatcgatgaacgtcctgaagaagtgacg
gatatgcagcgctccgtgcggggcgaagtcgtttcatcgacctttgacgaaccggccgtg
cgccacgttcaggtcgcggaaatggtcattgagaaggccaaacggttggttgagcacggt
cgtgacgttgtcatcctgctcgattccattacccgccttggccgcgcctataacactgtc
gttccgtcttctggcaaggtcctgacgggtggtgtggatgccaatgcgctgcaacgcccc
aagcgcttctttggcgcagcgcgtaatatcgaagaaggtggttcgctgacgattattgca
acggcattgatcgataccggcagccgtatggacgaagtgatctttgaagagttcaaaggt
accggcaattccgaaattgtgcttgaccgcaaggttgccgacaagcgtatcttcccgtcc
atggatattctgaaatccggaacgcgcaaagaagacctgctggtgccgcgtcaggatctg
cagaagatctttgttcttcgccggattcttgctccaatgggaacaaccgacgctatcgaa
ttcctgatcgacaaattgaaacagacgaagaccaatggcgatttcttcgaatcgatgaat
acctga

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