Allorhizobium ampelinum: Avi_6077
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Entry
Avi_6077 CDS
T00851
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Avi_6077 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avi03019
]
Avi_6077 (recQ)
03400 DNA repair and recombination proteins [BR:
avi03400
]
Avi_6077 (recQ)
Enzymes [BR:
avi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Avi_6077 (recQ)
Messenger RNA biogenesis [BR:
avi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Avi_6077 (recQ)
DNA repair and recombination proteins [BR:
avi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Avi_6077 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
GD_AH_C
Motif
Other DBs
NCBI-ProteinID:
ACM39083
UniProt:
B9K2I5
LinkDB
All DBs
Position
2:1098878..1100734
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AA seq
618 aa
AA seq
DB search
MPSSQPRHEPTFEHGERHPLSILKRVYGYPAFRGKQAEVVQQVVAGGDAVVLFPTGAGKS
LCFQIPALCRDGVGVVVSPLIALMRDQVEALKQVGVRAAALNSSLSREEFVEVRRAIADG
TLDLLYVTPERIVTPAFKDVIGSAKIALFAIDEAHCVSQWGHDFRPEYRELGKLAETYPG
VPRMALTATADPHTRDDIIDKLGLQSAKVFTTSFDRPNIAYEIVERDQPRQQLLRFLSRH
EGESGIVYCLSRAKVEETAEWLNTQGVRSLAYHAGMDRVLRDANQDAFLKEENLCLVATV
AFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSDVWMAYGMADVIQRGRMIDG
GTSAEEVKRVERAKLNALLAICETPGCRRQAILAHFGEVHPGSCGNCDTCLKPVETWDGT
DAAIKALAAIYRTGERFGTGHVIDVLLGNENDKTARFGHVDMPVFGAGKDLPLKTWQSVF
RQLLAAGLIRVDHDAFGALKLEPDARAVFKREREVRFRKDRPTKGKAARTASPAAARAKS
ALEGADMELFEALRAARMAIAKDLSVPPYVVFPDTTLIAFATERPDSREALLGISGVGQS
KLERYGDAFLEVIQAHER
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaagccagccacgccacgaaccgacattcgagcatggcgaaagacatccgctg
tccattctgaagcgggtctatggctatccggcttttcgcggcaagcaggccgaggtggtt
cagcaggtggtggctggcggcgatgcggtcgtgctgtttccgaccggggccggtaaatcc
ctctgcttccagatcccggcgctgtgccgcgatggggtcggcgttgtggtgtcgccgctg
attgcgttgatgcgcgaccaggtggaggcgttgaagcaagtgggtgtgcgggcggcggcg
ttgaattcgtctttgtcgcgggaggagtttgtcgaggtgcggcgcgccattgccgatggc
acgctcgatctgctgtatgtcacgccagagcggatcgtcacgcctgccttcaaggatgtg
atcggctctgcgaaaattgcgctgtttgccatcgatgaggcccattgcgtttcgcaatgg
ggccatgatttccgcccggaatatcgtgaactgggcaagctcgccgagacctatcccggc
gtgccgcgcatggcgctgacggcgaccgccgatccccatacacgcgatgacattatcgac
aagcttggtctgcaatcggccaaggtgtttaccacctccttcgaccggcccaatatcgcc
tatgaaatcgtcgagcgcgaccagccgcgccagcagctgctgcggtttctttcccgccat
gaaggcgagagcggcattgtctattgcctgtcgcgcgccaaagtcgaggaaacggcggaa
tggctcaacacgcaaggggtgaggtcgctggcctatcacgctggcatggaccgggtattg
cgtgatgccaatcaggatgcgttcctgaaggaggaaaacctttgccttgtcgcaaccgtc
gccttcggcatgggcatcgacaagccgaatgtgcgctatgtggcgcatcttgatctgcct
ggttccgtcgaggcctattaccaggaaaccgggcgagccggacgcgacgggctgccgtcg
gatgtgtggatggcctatggtatggcggatgtcatccagcgcgggcggatgatcgatggc
ggcacctcggctgaggaggtcaagcgggtcgagcgagccaagttgaatgcgctgctggca
atttgcgagacccccggctgccgtcgtcaggcaattctggcgcatttcggcgaagtgcat
cccggttcctgcggcaattgcgatacctgcctgaagccggtggaaacctgggatgggact
gacgcggcgatcaaggcgctggcggcgatctaccggaccggggagcgtttcggcaccggc
catgttattgatgtgctgctggggaatgagaacgacaagaccgcccgtttcggccacgtt
gacatgccggttttcggtgcgggcaaggatctgccgttaaaaacctggcaatcggtgttc
cggcagttgctggccgccggtctgatccgggtcgatcatgacgctttcggcgcgttgaaa
ctggagccggacgcgcgcgccgtcttcaagcgggagcgtgaagtgcgattccgcaaggac
cgtccgaccaagggcaaggcggcacgcactgcgtcacccgccgccgcacgagccaagtcg
gcgctggagggggccgatatggaactgttcgaggcgctcagggcggcgcgaatggcgatt
gccaaggatctttccgtgccgccttatgttgtattcccggatacgacgctgattgccttt
gcaacggaaaggcctgatagccgggaggcgctgctgggtatttctggcgtcggccaatca
aagcttgaacggtatggcgatgctttcctggaggttatccaggcgcatgagcgataa
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