Apaloderma vittatum (bar-tailed trogon): 104267339
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Entry
104267339 CDS
T08559
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104267339 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104267339 (PARN)
Enzymes [BR:
avit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104267339 (PARN)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104267339 (PARN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
T6PP_C
Motif
Other DBs
NCBI-GeneID:
104267339
NCBI-ProteinID:
XP_009867858
LinkDB
All DBs
Position
Unknown
AA seq
407 aa
AA seq
DB search
MDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAASLSYVSPNATKCPVTIPEDQKKFI
EKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVI
SKVDEEERKRREQQKQAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEAPFSPPKVE
SAEGFPSYDTSSEQLHEAGYDAYITGLCFISMANFLGTFLSPPKNHVSARSKLIEPFFNK
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAF
NT seq
1222 nt
NT seq
+upstream
nt +downstream
nt
atggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaagag
aagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagttca
ccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccagggattc
gattttaataaagtttttcgcaacggaattccatatttaaatcaggaagaagaaagacag
ctgagggaacagtatgatgaaaaacgttctcaggccaatggtgcagcatctctgtcatat
gtttctcctaatgccacaaaatgtcctgtaacaattcctgaagatcagaaaaagttcatt
gagaaagtagtggaacagatagaagacttattaaagaatgaagaaaatgaaagtttggaa
ctggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaagtat
ccaaaaggtatccatgttgaaaccctggagtcagataagaaggagagatacattgttatt
agcaaggtagatgaagaagaacggaagagaagagaacagcagaagcaggccaaagaacag
gaagaattgaatgatgcagtaggattttccagagtcattcatgccattgctaattctggc
aaacttgttattgggcacaatatgctgctggatgtaatgcacaccatacaccagttctat
tgccccctgcctgacgacctaagtgagttcaaagaagtaacatcctgtgtctttccccgg
ctactggatactaaactgatggcaagcacacaaccttttaaggagatcattaataataca
tcccttgcagaactggaaaagcgtttaaaagaggctccattcagccctcctaaagttgaa
agtgcagaaggatttccaagttatgatacatcttctgaacaacttcatgaagcaggatat
gatgcttacattactggactgtgcttcatttccatggctaatttcctaggaacattcctc
agtcctccgaaaaaccatgtatctgctagatcaaaactcattgaacccttttttaacaag
ctatttcttatgagagtaatggacataccatacctcaatttggaaggaccagacttgcag
ccaaaacgagatcatgttcttcatgttactttccccaaagagtggaagaccagtgacctt
taccagcttttcagtgcctttg
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