KEGG   Apaloderma vittatum (bar-tailed trogon): 104267581
Entry
104267581         CDS       T08559                                 
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
avit  Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03013  Nucleocytoplasmic transport
avit03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:avit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104267581
  09122 Translation
   03013 Nucleocytoplasmic transport
    104267581
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:avit03019]
    104267581
   03041 Spliceosome [BR:avit03041]
    104267581
Messenger RNA biogenesis [BR:avit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     104267581
Spliceosome [BR:avit03041]
 Complex C
  Other components
   EJC/TREX
    104267581
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104267581
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 104267581
NCBI-ProteinID: XP_009877494
LinkDB
Position
Unknown
AA seq 446 aa
TSTREALNNKSIKPLLNAFNQIPGSENEKKCTLDQAFRVIVEEEIINKAACENLLAIISL
AINGVTEGICTASTPFVLLGDVLDCLPLGQCDKIFTFVEKNVATWKSNTFYSAGKNYLLR
MCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEHESTL
GQKHTEEREEGMDVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQDYFRNPVQCYEKVSWK
TFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFR
RHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQLLSENPPDGERFSKMV
EHILNTEENWNSWKNEGCPSFVKERSQPDFHLGPPDSKPMRPVRKRPAPEDFLGKGPNKK
ILMGNEELTRLWNLCPDNMEACKSES
NT seq 1340 nt   +upstreamnt  +downstreamnt
acgtccacgagagaggctctgaataacaaaagtatcaagccgttgttgaatgcatttaac
cagattcctgggagtgaaaatgaaaagaaatgtaccttggatcaagcatttagagttata
gtggaagaagaaataataaacaaagctgcctgtgaaaatctcctagcaattatttctctt
gctattaatggagtcacagaaggcatctgcactgcatcaaccccttttgtgcttctgggg
gatgtactggattgcctacctttgggtcagtgtgacaaaattttcacttttgtggagaaa
aatgttgctacgtggaaatcgaacacattttactctgcagggaaaaattacttgcttcgg
atgtgcaatgacctcctaagaagattatctaagtcacaaaacacagtcttctgtggaaga
attcagctgttcttggctaggttatttccactttcagaaaagtcaggacttaacttgcag
agccagtttaacctggaaaatgtcactgttttcaataccaatgaacatgagagcactcta
ggacagaagcacaccgaggagagggaagagggaatggatgtagaagaaggtgaaatggga
gatgatgaagcaccaacaagttgttccattccaatagattataacctctatagaaaattc
tggtcacttcaagattattttagaaatcctgtgcagtgctatgagaaggtctcatggaaa
acttttctcaagtactcagaagaagttttggctgttttcaaaagttacaaattggatgac
actcaggcttcccgaaaaaagttggaagaactaaaaacaggaggagaacatgtgtatttt
gccaagttcctaactagtgaaaagctgatggatttacagctgagtgacagtaactttcgc
cgtcacatcctgttgcagtacctaatactctttcagtacctaaagggacaggtcaaattc
aaaagttcaaactatgttctaacagatgagcagtctctttggattgaagatactacaaaa
gcagtttaccagcttctttcagaaaatcctccagatggggaaagattctcaaaaatggta
gagcatatattaaatactgaagaaaattggaactcatggaagaatgagggctgcccaagt
tttgtaaaagaaagatctcagccagattttcatcttggacctcctgattctaagcccatg
aggcctgtaagaaagaggccagctccagaggacttcctaggaaaagggccaaacaaaaaa
atcctcatgggaaatgaagaactgactcgcctttggaacttatgtcccgataacatggaa
gcttgtaaatctgagagtag

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