Apaloderma vittatum (bar-tailed trogon): 104267581
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Entry
104267581 CDS
T08559
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03013
Nucleocytoplasmic transport
avit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104267581
09122 Translation
03013 Nucleocytoplasmic transport
104267581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104267581
03041 Spliceosome [BR:
avit03041
]
104267581
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104267581
Spliceosome [BR:
avit03041
]
Complex C
Other components
EJC/TREX
104267581
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104267581
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
104267581
NCBI-ProteinID:
XP_009877494
LinkDB
All DBs
Position
Unknown
AA seq
446 aa
AA seq
DB search
TSTREALNNKSIKPLLNAFNQIPGSENEKKCTLDQAFRVIVEEEIINKAACENLLAIISL
AINGVTEGICTASTPFVLLGDVLDCLPLGQCDKIFTFVEKNVATWKSNTFYSAGKNYLLR
MCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEHESTL
GQKHTEEREEGMDVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQDYFRNPVQCYEKVSWK
TFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFR
RHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQLLSENPPDGERFSKMV
EHILNTEENWNSWKNEGCPSFVKERSQPDFHLGPPDSKPMRPVRKRPAPEDFLGKGPNKK
ILMGNEELTRLWNLCPDNMEACKSES
NT seq
1340 nt
NT seq
+upstream
nt +downstream
nt
acgtccacgagagaggctctgaataacaaaagtatcaagccgttgttgaatgcatttaac
cagattcctgggagtgaaaatgaaaagaaatgtaccttggatcaagcatttagagttata
gtggaagaagaaataataaacaaagctgcctgtgaaaatctcctagcaattatttctctt
gctattaatggagtcacagaaggcatctgcactgcatcaaccccttttgtgcttctgggg
gatgtactggattgcctacctttgggtcagtgtgacaaaattttcacttttgtggagaaa
aatgttgctacgtggaaatcgaacacattttactctgcagggaaaaattacttgcttcgg
atgtgcaatgacctcctaagaagattatctaagtcacaaaacacagtcttctgtggaaga
attcagctgttcttggctaggttatttccactttcagaaaagtcaggacttaacttgcag
agccagtttaacctggaaaatgtcactgttttcaataccaatgaacatgagagcactcta
ggacagaagcacaccgaggagagggaagagggaatggatgtagaagaaggtgaaatggga
gatgatgaagcaccaacaagttgttccattccaatagattataacctctatagaaaattc
tggtcacttcaagattattttagaaatcctgtgcagtgctatgagaaggtctcatggaaa
acttttctcaagtactcagaagaagttttggctgttttcaaaagttacaaattggatgac
actcaggcttcccgaaaaaagttggaagaactaaaaacaggaggagaacatgtgtatttt
gccaagttcctaactagtgaaaagctgatggatttacagctgagtgacagtaactttcgc
cgtcacatcctgttgcagtacctaatactctttcagtacctaaagggacaggtcaaattc
aaaagttcaaactatgttctaacagatgagcagtctctttggattgaagatactacaaaa
gcagtttaccagcttctttcagaaaatcctccagatggggaaagattctcaaaaatggta
gagcatatattaaatactgaagaaaattggaactcatggaagaatgagggctgcccaagt
tttgtaaaagaaagatctcagccagattttcatcttggacctcctgattctaagcccatg
aggcctgtaagaaagaggccagctccagaggacttcctaggaaaagggccaaacaaaaaa
atcctcatgggaaatgaagaactgactcgcctttggaacttatgtcccgataacatggaa
gcttgtaaatctgagagtag
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