Apaloderma vittatum (bar-tailed trogon): 104268115
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Entry
104268115 CDS
T08559
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104268115 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
avit03041
]
104268115 (DDX46)
Enzymes [BR:
avit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104268115 (DDX46)
Spliceosome [BR:
avit03041
]
Complex A
U2 snRNP components
U2 related factors
104268115 (DDX46)
Complex B
104268115 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
104268115
NCBI-ProteinID:
XP_009867025
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
VKIMRKVGLSIDYVSILIPTESFRGEEVVKGHYRKRSASRGRSGSRSRSRSPSDKRGKRG
EDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRQRRSRSRERERSRERRRSRSRERRRSRS
RSRGRRSRSSSPSKNRKTENRSRSKEKTEGVEVSKEKKKDKDDKEEEKDKDAAPNTVATE
NFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEEE
TAEGEKEGNEVEDEELDPLDAYMEEVKEEVKKFNMRSVKGGGGSEKKTGPTVTKVVTVVT
TKKAAAESEKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYE
PFRKNFYVEVPELAKMTQEEVNVYRLELEGITVKGKGCPKPIKTWVQCGISMKILTALKK
HGYEKPTPIQTQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAV
IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM
LAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEA
LARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQ
EHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGICKLLVATSVAARGLDVKQLM
LVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGNPIPTDL
EKLWADFKDQQKAEGKLIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDT
AVDIDEQIESMFNSKKRVKDMGAPGTSNAPTPSAGNAEKLEIAKRLALRINAQKNLGAEA
QVLVPFHFKDVMQQATNAILRGGTIQAPTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQ
DGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKE
GERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3214 nt
NT seq
+upstream
nt +downstream
nt
ggtaaaaatcatgcgtaaagtgggtttaagcattgattatgtttctattttaatacctac
agaaagttttagaggggaagaagtggtaaaagggcactatcggaagcgctctgcgtcacg
tggacgctctggtagccgttctagaagtcgttctccatctgacaaaagagggaaacgggg
agaagacagacgctccagaagtagagaccgagaccgtaggcgtgagaggtcacgcagcag
ggacaagagaaggtctcgctcgcgtgacagaaagcgtcaaaggcgttcaagaagtagaga
aagggaacggagccgagagagaagaagatcccggagccgagagaggaggcgctcaagaag
cagaagtagaggtagacggtctcgatcctccagtccaagcaagaacaggaaaactgaaaa
cagatcaagatcgaaagaaaagaccgaaggtgtggaagtttccaaagaaaagaaaaagga
caaagatgacaaagaagaagagaaagataaagatgctgccccaaatactgtggccactga
gaattttgatcagaacaaactagaagaagaaatgcgaaaacgaaaagagcgagtggagaa
atggagggaagagcaacgcaagaaggctatggagaacataggagaactgaaaaaagaaat
cgaagagatgaaacaggggaaaaaatggagtttagaagatgatgatgatgacgaagagga
aactgcagaaggagagaaagaaggcaatgaggttgaagacgaagaactagatcctttgga
tgcttacatggaagaagtaaaagaagaggtcaagaagttcaatatgagaagtgtgaaagg
tggaggtgggagcgaaaagaaaactggaccgactgttaccaaagtagtaactgtggtgac
aaccaaaaaggcagctgcagagtcagaaaagaagaaaggggagctcatggagaacgacca
agatgcgatggagtattcctcagaagaggaggaagttgatcttcagaccgccctgaccgg
ctatcagaccaagcagagaaagctgctagaaccagtggatcatggaaagatagaatatga
acctttcaggaaaaacttctatgttgaagtaccagaactagctaaaatgacccaagaaga
ggtgaatgtgtacaggctggagttggagggaattacagtcaagggaaaaggctgccccaa
accgataaaaacctgggtacagtgtgggatttccatgaagattctcactgccctcaaaaa
acatggctatgaaaagcccactcccattcaaacccaggctatcccagcaattatgaacgg
acgggacttgattggcatcgctaaaacgggcagcggtaaaacgatcgcgtttctgttgcc
catgttcaggcacatcatggatcagagagcgttagaagaaggagaaggtcccatagctgt
cattatgacacctactcgcgagttggctttgcagatcaccaaggagtgcaagaaattctc
caagacgcttgggcttcgagttgtctgtgtttatggagggacgggaatcagcgaacagat
agctgaactcaaaagaggtgctgaaattattgtttgcacacctgggcgtatgattgacat
gttagcagctaacaatggtcgggtgacaaatctccgtagagtcacatatgttgtactcga
tgaagcagacagaatgtttgacatgggttttgagcctcaggtaatgcgcattgtagacaa
cgtcaggcctgatcgtcagactgtcatgttctcagctacttttcccagagctatggaggc
tttggctcggagaatcctcagtaaacctatagaagtgcaggtcggaggcagaagcgttgt
ctgttctgatgtggagcagcacgtgattgtcatagaagaggagaacaagtttttgaagtt
attggagttactgggacactatcaggagaaaggctcggttatcatatttgtagataaaca
agaacacgccgatgggttgttgaaagatttaatgagagcctcttacccttgcttgtctct
tcatggaggtatcgatcagtacgacagggacagcataattaatgatttcaagaatggaat
ctgcaaacttctggtggccacatctgtagcagcaaggggcttggatgtaaaacagctgat
gctggtggtcaattacagctgtcccaaccactacgaagattacgtgcaccgagcaggccg
aaccggacgagctggcaataaagggtacgcatatacattcatcactgaggatcaggcccg
gtatgctggtgatatcattaaggctttggaattgtctgggaatccaattcctactgattt
ggagaagctctgggctgacttcaaagaccaacagaaggctgaagggaaactgattaaaaa
aagcagcgggttctctggcaaaggttttaaatttgatgaaacagaacaggctttggctaa
tgaaagaaagaagctacaaaaagcagctcttggcttgcaagattcagatgatgaagatac
agctgttgatattgatgaacaaattgaaagcatgttcaactcaaagaaaagagtaaaaga
catgggagcaccaggaacatccaacgctcctacgccgtcagctggaaacgcagaaaaatt
ggaaattgctaaaagattggccttaagaatcaatgcccagaagaatcttggagcggaggc
ccaagtattggtccccttccactttaaggatgtgatgcagcaggctacaaacgctatcct
gagaggaggcaccattcaagctcctactgtgtctgccaagaccattgcagagcagctggc
tgaaaaaatcaatgctaagctcaattacgtacccatagagaagcaggaggaagagaaaca
ggatggaggacaaaatgaatcctttaagagatatgaagaagaattggagatcaatgactt
cccacagacggccagatggaaagttacctccaaagaagcgctgcagaggatcagtgaata
ttctgaggctgctattacaatcagaggaacttatttccctccaggcaaagaacccaagga
aggagaacgaaagatttatttggctatagaaagtgccaacgaactggctgtacagaaagc
aaaggcagaaatcacgcgacttataaaggaggagctcatcagattgcaaaattcttacca
accaaccaacaaaggaagatacaaagttctatga
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