Apaloderma vittatum (bar-tailed trogon): 104268256
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Entry
104268256 CDS
T08559
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
avit03036
]
104268256 (DICER1)
Chromosome and associated proteins [BR:
avit03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104268256 (DICER1)
microRNA pathway
RISC loading complex
104268256 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
ResIII
Helicase_C
Amidoligase_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104268256
NCBI-ProteinID:
XP_009869144
LinkDB
All DBs
Position
Unknown
AA seq
1920 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVVQQVSAVRTHSDLK
VGEYSSLEITESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLA
IQDHPYREIMKICENYPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYASQPCEIVVDCGPYTDKSGLYGRLLKELDEALAFLNDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDLELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKGFEEDLKTYKAIEKILRNKCSKSVDTNETE
TEPIVDDDDIFPPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEEYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISIPNSSLVENENYCKHSTIVVPENAAHQGANR
TSSAENHDQMSVSYRTLLNESPSKLQIDVSAELAAINGVSYNKNLANGNCNLVNRDFCQG
NQLNYCRQEIPVQPTTSYPIQNLYNSENQPKPSNECTLLSNKYLDGNANRSTSDGCPKMA
VTTSTSKAINLSKGGADSENPSSVYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLGD
SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
LPPGYVVNQDKSNTDKWEKDEMTKENLLANGKLDDYDDDEEDEDLMWRLPKEETDFEDDF
LEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSLGNVQFSSDFDDFD
YSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIADC
VEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWEGALCSTGENSNSEQKILSPNSI
SASVANSELSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAY
LLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN
TIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDI
EVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEP
ETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtccattttttggactaccatggcaacaagaagcaattcatgataac
atttacacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaataaaaatggaaaaagaactgtgttcttggtc
aactcagcaaatcaagttgttcaacaagtgtcagctgtcaggacacattcggatcttaaa
gtgggagagtattcaagtttagagataactgaatcatggacaaaagagaagtggagtcag
gaattctctaagcatcaggttctggttatgacgtgtcatgttgctttgactgttttgaga
aatgaatatttatccctgtcaaatattaatcttctggtgtttgatgagtgccatcttgca
atccaggatcacccgtaccgtgaaattatgaagatctgtgagaattatccatcgtgccct
cgaattttgggattaacagcttccattttaaatgggaaatgtgatcctgcagaattagaa
gagaagatccagaaactggagaaaattttaaagagcaatgctgaaactgcaactgatttg
gtggtcttagacagatatgcttctcagccgtgtgagattgttgtagactgtggaccatat
actgacaaaagtgggttgtatggaagattattaaaggaattggatgaagcgcttgctttt
ctaaatgactgcaacatatctgtacattcaaaagaaagagattctaccttaatttctaag
cagatattgtcagactgtcgagctgtgttggttgttctgggaccctggtgtgcagataag
gtagctggaatgatggtgagagagctacagaagtatatcaaacacgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtaaccccaaaagtaataaagctg
ctcgaaatcttgcgcaaatataaaccatatgaacggcagcagtttgaaagtgttgaatgg
tataacaataggaatcaggataattatgtatcttggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccctttactaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
ataaaagaagctggcaagcaagatctggagctggcttacatcagtagcaattttataact
ggacatggcattggcaagaaccagcctcgtaacaagcagatggaagtagaattcagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaatctacttattgctactagt
attgtagaagagggtgttgacataccaaaatgcaacttggtggtgcgttttgatttgccc
acagaataccgttcctatgtacagtcaaaaggaagagctagagcaccaatttccaattat
atcatgttagcagatacagacaaaatcaaagggtttgaagaagatcttaagacatacaaa
gcaattgagaagatcctcagaaacaagtgctcaaaatctgttgataccaatgaaactgaa
actgaacccattgttgatgatgatgatatatttccaccctatgtgttgaggccagatgag
aatagtccaagagttactattaacactgctattggacacataaataggtactgtgctaga
ttaccgagtgatccatttacacacctagctcccaagtgtaaaacccgagaactacctgat
catacgttttactctactctctacctgccaatcaactcacctcttcgagcttcaattgtt
ggtcctccaatgagttgtgcaagactggctgagagagtcgtagctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaggagcttgatttacatgatgaagaagaaaccagtgttccaggaaggcca
ggctctacaaagcgaagacagtgctaccctaaagctattccagaatgtttgagggatagt
tatcccaaacctgatcagccctgttacctgtatgtaataggaatggtgttaacgactcct
ctacctgatgagctcaacttcaggagacgaaagctatatcctcctgaggatacaacaaga
tgctttggcatattgacagccaaacctatacctcagattcctcactttcctgtgtatact
cgctctggagaagttacaatatctattgagcttaagaaatctggttttactctgtctttg
caaatgcttgagctgataacacgactccaccagtacattttttcacatattcttcgtctt
gagaaacctgcactagagttcaaacccacagaagctgattcagcctattgtgttctacct
cttaatgttgttgatgactccagcactttggacattgactttaagtttatggaagacatt
gaaaaatctgaggcgcgtacaggcattcccagtacacaatatacaaaagaaatgcctttt
attttcaagttagaagagtaccaggatgcggttatcattccacggtatcgaaattttgat
cagcctcatcgattttacgtagctgatgtgtacactgatcttactccactcagtaaattc
ccttccccagaatatgaaacttttgctgaatattataaaacaaaatataatcttgacctt
accaatctcaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaaggggaaagcacttccactaagcagtgctgagaagagg
aaagcaaagtgggaaagtttgcagaataagcagatactggttccagagctctgtgctata
catcctattccagcatcattgtggagaaaggcagtttgcctccccagcatcctgtaccgc
ctgcactgcttgttgacagcagaggaactacgagctcaaacagccactgatgctggtgta
ggggttaaatcacttcctgcagatttcagatatcctaacttggacttcggatggaaaaag
tctattgacagcaaatctttcatctctattcctaactcttctttagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
acctcttctgcggaaaaccatgaccaaatgtctgtgagttacagaacattgctcaatgag
tcacccagtaaactccaaattgatgtctcggcagaacttgcagcaattaatggtgtttct
tacaataaaaatcttgccaacggcaattgcaatttagttaacagagacttttgccaagga
aatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacagtgagaaccagcccaagcccagcaatgaatgtactctactgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccaaaatggca
gtgaccaccagtacttcaaaagctattaatctttcaaaaggtggagcagattctgaaaac
ccttccagtgtgtactcctcaaaaactcttggtcctaatcctggtctcattcttcaagct
ttgactctttcaaatgctagtgacggatttaatctggagcggctagaaatgcttggtgat
tcatttttaaagcacgccatcaccacatacttgttttgcacttaccctgatgctcatgag
ggacgactgtcatatatgagaagcaaaaaagtcagcaactgtaacttgtatcgccttgga
aagaagaaaggactgcctagtcgtatggtagtgtccatttttgatcccccggtgaattgg
cttcctcctggttatgtagttaaccaagacaagagcaacactgataagtgggagaaagat
gaaatgacaaaagaaaacttgttggctaatggcaaacttgatgattacgacgatgatgaa
gaagatgaagacctgatgtggaggttacccaaggaagaaacagactttgaagatgatttt
ctggaatatgatcaggagcatatcaaattcattgataatatgttaatgggatcaggggct
tttgtgaagaaaatttctctctcacacttttcaaccactgattcaaactatgaatggaaa
gcacccaaaaagtcatccctgggtaacgttcagttttcatcagattttgatgattttgac
tacagctcttgggatgctatgtgctatctggatcctagcaaggccgttgaagaggatgat
tttgtagtgggcttctggaacccgtcagaagagaactgtggtgttgatgcgggcaagcag
tctatctcgtatgacttgcataccgagcagtgcattgctgacaaaagcattgcagactgc
gtggaagccctcttgggttgctacctgaccagctgtggtgaaagagctgctcagcttttc
ttgtgttcattggggctgaaggtgctccctgtaattaaaaagactgattgggaaggcgct
ttgtgttccaccggagagaatagtaacagtgagcagaaaattctttcaccaaactccatt
tctgcttctgtagctaattcagagctttccttgtataaagacctggagtacggctgtttg
aagattccaccgaggtgtatgtttgatcacccagatgctgaaaaaaccctaaatcacctt
atttctggttttgaaaactttgagaagaaaataaactacagttttaagaacaaggcttat
ctccttcaggcatttactcatgcctcgtaccattataataccattactgattgttaccag
cgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctttatgaa
gaccctcggcaacactctccaggagttcttactgacctgcgatctgctctagtcaataat
accatttttgcatcattagctgtaaagtatgactaccacaagtacttcaaagctgtctct
cctgaactgtttcatgttattgatgactttgtgcagtttcagatggaaaagaatgaaatg
caaggaatggattctgagctcagaagatctgaagaagatgaagaaaaagaggaagacatt
gaagtaccaaaggccatgggagatatatttgagtcccttgctggtgccatttatatggat
agtggaatgtctttggaaatggtttggcaagtgtactatccgatgatgaggccattaata
gaaaaattttctgctaatgtgccccgttccccggtgcgagagctactggagatggagcca
gagacagccaaatttagtcctgcagaaagaacttacgacggaaaggtcagagtaacagtg
gaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaatct
gcagctgcaagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaacagc
tga
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