Apaloderma vittatum (bar-tailed trogon): 104269419
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Entry
104269419 CDS
T08559
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03013
Nucleocytoplasmic transport
avit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104269419 (UPF2)
03015 mRNA surveillance pathway
104269419 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104269419 (UPF2)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104269419 (UPF2)
mRNA cycle factors
P-body specific factors
104269419 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF4835
pPIWI_RE_Y
Motif
Other DBs
NCBI-GeneID:
104269419
NCBI-ProteinID:
XP_009870325
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
VRKKDQINIETKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCG
RFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPL
QEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLL
AGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFR
TLYSFTSFGVNPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQR
YVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKL
GIVNDKDSKDSITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEE
EEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGE
SVKVHQLDVAIPLHLKSQLKKGPPLGGGEGDSESGDTMPFVMLTRKGNKQQFKILNVPMS
SQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPR
YQHPKGAPNADLIFKTGGRRR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtaagaaaaaaggaccagatcaacattgaaacaaagaacaaaactgtgagatttattggt
gagcttaccaagtttaagatgttctccaaaaacgatactctccactgtttaaagatgctt
ctgtcagacttttctcatcaccacattgaaatggcatgtactttactggaaacctgtgga
agatttctcttcagatcaccagaatctcacttaagaaccagtgttctcctggaacaaatg
atgagaaaaaagcaagcgatgcatctcgatgcacgctacgttacaatggtagaaaatgcc
tattactactgtaatccccctccagctgaaaaaactgtgaagaaaaaacgtcctccttta
caggaatatattcgtaagcttctttacaaggatctttccaaggttaccacagagaaggtc
ctgcgacagatgcgcaagctgccttggcaagatgcagaagtaaaagactatgttatatgc
tgtatgatcaacatctggaatgtgaaatacaacagtattcactgtgtagccaacctccta
gcggggttggtcctttaccaggaagatgttggaattcatgttgtggatggagtgctagag
gatattcgactaggaatggaggttaaccagccaaagtttaaccagcggcggatcagcagt
gccaagttcttgggggagctttacaattatcgaatggtggaatcggctgtaatatttcga
actctatattctttcacatcatttggtgtgaaccctgatggcagtcctagtccactggac
cctccagagcatcttttcagaatcagactagtttgtactatccttgatacctgtgggcag
tattttgacagaggatccagcaaacgaaaacttgattgcttccttgtatattttcagcgg
tatgtttggtggaaaaaaagtctggatgtttggacaaaagaccacccatttcctatagac
atagactatatgatcagtgatacactggaactgctgagaccaaagataaagctctgcaat
tcgctggaagaagctgtcagacaggtgcaagacttggaacgagaattcttaataaaattg
ggaattgtgaatgacaaagattccaaagattccattacagaaggagagaatctagaagag
gatgaagaggaggaggaaggtggagctgagacagaggaacaatctggaaatgaaagtgaa
gtaaatgagccagaagaagaggagggctctgacaatgaggaagaagaaggtgaagaagag
gaggaagaaaacacggattatcttacggactccaataaggaaaatgaaaccgatgaggag
aacaccgaagtaatgattaaaggaggaggacttaagcatgtcccttgtgcagaagatgag
gacttcattcaggcactggataaaatgatgctagaaaatcttcagcaacggagtggtgaa
tctgttaaagtgcatcagctggatgttgctattcctctacatctcaaaagtcaactcaag
aagggtcccccactgggaggtggggaaggagattcagagtctggagacacgatgccattt
gtcatgttaacacgaaaaggcaacaaacagcagtttaagatcctaaatgtaccgatgtct
tcccaacttgctgcaaaccactggaaccaacagcaagctgaacaggaggagagaatgagg
atgaaaaagctcactttggatatcaatgaacggcaagaacaagaggactaccaggaaatg
ttgcagtctctggcacagcgtccagctccagcaaatactaatcgtgaacggcggcctcgt
taccagcatccgaagggagcacctaatgcagatctaatctttaaaactggcgggaggaga
cgttga
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